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xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features

Description: Article discussing the eXtensible Genome Data Broker (xGDB) and an open-source computational infrastructure for the integrated evaluation and anlysis of genome features.
Date: November 20, 2006
Creator: Schlueter, Shannon D.; Wilkerson, Matthew D.; Dong, Qunfeng & Brendel, Volker
Item Type: Refine your search to only Article
Partner: UNT College of Arts and Sciences
open access

TableMaker: An ad hoc Query Tool for Relational Databases

Description: This paper discusses an ad hoc query tool for relational databases. Most Web servers hosting biological data limit users to a defined set of search options and output formats that are short of the whole range of options available to users with direct database access. However, to make full use of the wealth of data in the database resource, it is desirable to have an intermediate solution that provides a broad range of flexible query and output options through a Web portal.
Date: July 2008
Creator: Lushbough, Carol; Duvick, Jon; Dong, Qunfeng; Jennewein, Douglas; Reynoldson, Joe & Brendel, Volker
Item Type: Refine your search to only Paper
Partner: UNT College of Arts and Sciences
open access

Enabling Large Scale Scientific Computations for Expressed Sequence Tag Sequencing over Grid and Cloud Computing Clusters

Description: This paper discusses expressed sequence tag sequencing over grid and cloud computing clusters, specifically for biological applications. In this paper, the authors propose a Web service framework for high-level job scheduling that is developed for scientific applications.
Date: September 2009
Creator: Pallickara, Sangmi Lee; Pierce, Marlon; Dong, Qunfeng & Kong, ChinHua
Item Type: Refine your search to only Paper
Partner: UNT College of Arts and Sciences
open access

Elicitation of Protein-Protein Interactions from Biomedical Literature Using Association Rule Discovery

Description: Extracting information from a stack of data is a tedious task and the scenario is no different in proteomics. Volumes of research papers are published about study of various proteins in several species, their interactions with other proteins and identification of protein(s) as possible biomarker in causing diseases. It is a challenging task for biologists to keep track of these developments manually by reading through the literatures. Several tools have been developed by computer linguists to a… more
Date: August 2010
Creator: Samuel, Jarvie John
Item Type: Refine your search to only Thesis or Dissertation
Partner: UNT Libraries
open access

The ecoresponsive genome of Daphnia pulex

Description: This document provides supporting material related to the sequencing of the ecoresponsive genome of Daphnia pulex. This material includes information on materials and methods and supporting text, as well as supplemental figures, tables, and references. The coverage of materials and methods addresses genome sequence, assembly, and mapping to chromosomes, gene inventory, attributes of a compact genome, the origin and preservation of Daphnia pulex genes, implications of Daphnia's genome struc… more
Date: February 4, 2011
Creator: Colbourne, John K.; Pfrender, Michael E.; Gilbert, Donald; Thomas, W. Kelley; Tucker, Abraham; Oakley, Todd H. et al.
Item Type: Refine your search to only Article
Partner: UNT Libraries Government Documents Department
open access

The Microbial Communities in Male First Catch Urine Are Highly Similar to Those in Paired Urethral Swab Specimens

Description: Article discussing the microbial communities in male first catch urine and how these are highly similar to those paired in urethral swab specimens.
Date: May 13, 2011
Creator: Dong, Qunfeng; Nelson, David E.; Toh, Evelyn; Diao, Lixia; Gao, Xiang; Fortenberry, J. Dennis et al.
Item Type: Refine your search to only Article
Partner: UNT College of Arts and Sciences
open access

GSV: a web-based genome synteny viewer for customized data

Description: Article discussing the genome synteny viewer (GSV), a web-based viewer providing a unique option for biologists to analyze genome synteny by uploading their own data set to a web-based comparative genome browser.
Date: August 2, 2011
Creator: Revanna, Kashi V.; Chiu, Chi-Chen; Bierschank, Ezekiel & Dong, Qunfeng
Item Type: Refine your search to only Article
Partner: UNT College of Arts and Sciences
open access

Multiple domains in MtENOD8 protein including the signal peptide target it to the symbiosome

Description: Article presenting evidence from GFP fusion experiments that the MtENOD8 protein contains at least three symbiosome targeting domains, including its N-terminal signal peptide (SP).
Date: May 2012
Creator: Meckfessel, Matthew H.; Blancaflor, Elison B.; Plunkett, Michael; Dong, Qunfeng & Dickstein, Rebecca
Item Type: Refine your search to only Article
Partner: UNT College of Arts and Sciences
open access

Clustering Algorithms for Time Series Gene Expression in Microarray Data

Description: Clustering techniques are important for gene expression data analysis. However, efficient computational algorithms for clustering time-series data are still lacking. This work documents two improvements on an existing profile-based greedy algorithm for short time-series data; the first one is implementation of a scaling method on the pre-processing of the raw data to handle some extreme cases; the second improvement is modifying the strategy to generate better clusters. Simulation data and real… more
Date: August 2012
Creator: Zhang, Guilin
Item Type: Refine your search to only Thesis or Dissertation
Partner: UNT Libraries
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