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Applications of Fourier Transform Ion Cyclotron Resonance (FT-ICR) and Orbitrap Based High Resolution Mass Spectrometry in Metabolomics and Lipidomics

Description: This review explores the latest developments in Fourier transform mass spectrometry and Orbitrap based metabolomics technology, its advantages and drawbacks for using in metabolomics and lipidomics studies, and development of novel approaches for processing high resolution mass spectrometry data.
Date: May 25, 2016
Creator: Ghaste, Manoj; Mistrik, Robert & Shulaev, Vladimir
Partner: UNT College of Arts and Sciences

An UPLC-ESI-MS/MS Assay Using 6-Aminoquinolyl-N-Hydroxysuccinimidyl Carbamate Derivatization for Targeted Aminio Acid Analysis: Application to Screening of Arabidopsis thaliana Mutants

Description: This article presents a method that enables thirty-eight metabolites (proteinogenic amino acids and related compounds) to be analyzed, with an improved sensitivity of 1 to 5 orders of magnitude compared to existing methods.
Date: July 6, 2012
Creator: Salazar, Carolina; Armenta, Jenny M. & Shulaev, Vladimir
Partner: UNT College of Arts and Sciences

Crystal structure of (3E,5E)-3,5-bis[4-(diethylazaniumyl)benzylidene]-1-methyl-4-oxopiperidin-1-ium trichloride dihydrate: a potential biophotonic material

Description: This article describes the crystal structure of the title compound, and examines application as an agent for locating cancer cells with two-photon excited fluorescence as as a potential agent for a photodynamic treatment of cancer. This article includes supporting information with computing details of the study.
Date: November 4, 2015
Creator: Nesterov, Volodymyr V.; Zakharov, Lev N.; Nesterov, Vladimir N. & Shulaev, Vladimir
Partner: UNT College of Arts and Sciences

Functional Assessment of the Medicago truncatula NIP/LATD Protein Demonstrates That It Is a High-Affinity Nitrate Transporter

Description: Article on the functional assessment of the Medicago truncatula NIP/LATD protein demonstrating that it is a high-affinity nitrate transporter.
Date: October 2012
Creator: Bagchi, Rammyani; Salehin, Mohammad; Adeyemo, O. Sarah; Salazar, Carolina; Shulaev, Vladimir; Sherrier, D. Janine et al.
Partner: UNT College of Arts and Sciences

A toolbox of genes, proteins, metabolites and promoters for improving drought tolerance in soybean includes the metabolite coumestrol and stomatal development genes

Description: This article identifies metabolites, proteins, and genes that are strongly up or down regulated during rapid water stress following remove from a hydroponics system.
Date: February 9, 2016
Creator: Tripathi, Prateek; Rabara, Roel C.; Reese, R. Neil; Miller, Marissa A.; Rohila, Jai S.; Subramanian, Senthil et al.
Partner: UNT College of Arts and Sciences

Label-free shotgun proteomics and metabolite analysis reveal a significant metabolic shift during citrus fruit development

Description: Article discussing label-free shotgun proteomics and metabolite analysis revealing a significant metabolic shift during citrus fruit development.
Date: 2011
Creator: Katz, Ehud; Boo, Kyung Hwan; Kim, Ho Youn; Eigenheer, Richard A.; Phinney, Brett S.; Shulaev, Vladimir et al.
Partner: UNT College of Arts and Sciences

Ultra-fast alterations in mRNA levels uncover multiple players in light stress acclimation in plants

Description: This article contains RNA sequencing analysis of Arabidopsis thaliana plants subjected to light stress in order to identify and characterize rapid changes in the steady-state level of different transcripts in response to light stress.
Date: September 26, 2015
Creator: Suzuki, Nobuhiro; Devireddy, Amith R.; Inupakutika, Madhuri A.; Baxter, Aaron; Miller, Gad; Song, Luhua et al.
Partner: UNT College of Arts and Sciences

The genome of woodland strawberry (Fragaria vesca)

Description: This article reports the draft F. vesca genome, which was sequenced to x39 coverage using second-generation technology, assembled de novo and then anchored to the genetic linkage map into seven pseudochromosomes.
Date: December 26, 2010
Creator: Shulaev, Vladimir; Sargent, Daniel J.; Crowhurst, Ross N.; Mockler, Todd C.; Folkerts, Otto; Delcher, Arthur et al.
Partner: UNT College of Arts and Sciences