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Accurate phylogenetic classification of DNA fragments based onsequence composition

Description: Metagenome studies have retrieved vast amounts of sequenceout of a variety of environments, leading to novel discoveries and greatinsights into the uncultured microbial world. Except for very simplecommunities, diversity makes sequence assembly and analysis a verychallenging problem. To understand the structure a 5 nd function ofmicrobial communities, a taxonomic characterization of the obtainedsequence fragments is highly desirable, yet currently limited mostly tothose sequences that contain phylogenetic marker genes. We show that forclades at the rank of domain down to genus, sequence composition allowsthe very accurate phylogenetic 10 characterization of genomic sequence.We developed a composition-based classifier, PhyloPythia, for de novophylogenetic sequence characterization and have trained it on adata setof 340 genomes. By extensive evaluation experiments we show that themethodis accurate across all taxonomic ranks considered, even forsequences that originate fromnovel organisms and are as short as 1kb.Application to two metagenome datasets 15 obtained from samples ofphosphorus-removing sludge showed that the method allows the accurateclassification at genus level of most sequence fragments from thedominant populations, while at the same time correctly characterizingeven larger parts of the samples at higher taxonomic levels.
Date: May 1, 2006
Creator: McHardy, Alice C.; Garcia Martin, Hector; Tsirigos, Aristotelis; Hugenholtz, Philip & Rigoutsos, Isidore
Partner: UNT Libraries Government Documents Department

Data quality objectives for K West canister sludge sampling

Description: Data Quality Objectives have been developed for a limited campaign of sampling K Basin canister sludge. Specifically, samples will be taken from the sealed K West Basin fuel canisters. Characterization of the sludge in these canisters will address the needs of fuel retrieval which are to collect and transport sludge which is currently in the canisters. Data will be gathered on physical properties (such as viscosity, particle size, density, etc.) as well as on chemical and radionuclide constituents and radiation levels of sludge. The primary emphasis will be on determining radionuclide concentrations to be deposited on Ion Exchange Modules (IXMS) during canister opening and fuel retrieval. The data will also be useful in determining whether K West Basin sludge meets the waste acceptance criteria for Hanford waste tanks as a backup disposal concept and these data will also supply information on the properties of sludge material which will1403 accompany fuel elements in the Multi-Canister Overpacks (MCOS) as envisioned in the Integrated Process Strategy (IPS).
Date: December 11, 1996
Creator: Makenas, B. J.
Partner: UNT Libraries Government Documents Department

Flammable gas tank waste level reconciliation for 241-SX-105

Description: Fluor Daniel Northwest was authorized to address flammable gas issues by reconciling the unexplained surface level increases in Tank 241-SX-105 (SX-105, typical). The trapped gas evaluation document states that Tank SX-105 exceeds the 25% of the lower flammable limit criterion, based on a surface level rise evaluation. The Waste Storage Tank Status and Leak Detection Criteria document, commonly referred to as the Welty Report is the basis for this letter report. The Welty Report is also a part of the trapped gas evaluation document criteria. The Welty Report contains various tank information, including: physical information, status, levels, and dry wells. The unexplained waste level rises were attributed to the production and retention of gas in the column of waste corresponding to the unaccounted for surface level rise. From 1973 through 1980, the Welty Report tracked Tank SX-105 transfers and reported a net cumulative change of 20.75 in. This surface level increase is from an unknown source or is unaccounted for. Duke Engineering and Services Hanford and Lockheed Martin Hanford Corporation are interested in determining the validity of unexplained surface level changes reported in the Welty Report based upon other corroborative sources of data. The purpose of this letter report is to assemble detailed surface level and waste addition data from daily tank records, logbooks, and other corroborative data that indicate surface levels, and to reconcile the cumulative unaccounted for surface level changes as shown in the Welty Report from 1973 through 1980. Tank SX-105 initially received waste from REDOX starting the second quarter of 1955. After June 1975, the tank primarily received processed waste (slurry) from the 242-S Evaporator/Crystallizer and transferred supernate waste to Tanks S-102 and SX-102. The Welty Report shows a cumulative change of 20.75 in. from June 1973 through December 1980.
Date: June 23, 1997
Creator: Brevick, C.H. & Gaddie, L.A.
Partner: UNT Libraries Government Documents Department

Evaluation of process for sludge particle size reduction

Description: This document evaluates the available technology for K Basin sludge particle size. The results can be used to demonstrate the sensitivity or lack thereof, of K Basin sludge to available reduction processes and TWRS proposed particle acceptance criteria.
Date: March 18, 1997
Creator: Precechtel, D.R. & Packer, M.J., Fluor Daniel Hanford
Partner: UNT Libraries Government Documents Department

W-320 Project thermal modeling

Description: This report summarizes the results of thermal analysis performed to provide a technical basis in support of Project W-320 to retrieve by sluicing the sludge in Tank 241-C-106 and to transfer into Tank 241-AY-102. Prior theraml evaluations in support of Project W-320 safety analysis assumed the availability of 2000 to 3000 CFM, as provided by Tank Farm Operations, for tank floor cooling channels from the secondary ventilation system. As this flow availability has no technical basis, a detailed Tank 241-AY-102 secondary ventilation and floor coating channel flow model was developed and analysis was performed. The results of the analysis show that only about 150 cfm flow is in floor cooLing channels. Tank 241-AY-102 thermal evaluation was performed to determine the necessary cooling flow for floor cooling channels using W-030 primary ventilation system for different quantities of Tank 241-C-106 sludge transfer into Tank 241-AY-102. These sludge transfers meet different options for the project along with minimum required modification of the ventilation system. Also the results of analysis for the amount of sludge transfer using the current system is presented. The effect of sludge fluffing factor, heat generation rate and its distribution between supernatant and sludge in Tank 241-AY-102 on the amount of sludge transfer from Tank 241-C-106 were evaluated and the results are discussed. Also transient thermal analysis was performed to estimate the time to reach the steady state. For a 2 feet sludge transfer, about 3 months time will be requirad to reach steady state. Therefore, for the purpose of process control, a detailed transient thermal analysis using GOTH Computer Code will be required to determine transient response of the sludge in Tank 241-AY-102. Process control considerations are also discussed to eliminate the potential for a steam bump during retrieval and storage in Tanks 241-C-106 and 241-AY-102 respectively.
Date: March 18, 1997
Creator: Sathyanarayana, K.
Partner: UNT Libraries Government Documents Department

Grout performance in support of in situ grouting of the TH4 tank sludge

Description: The cold demonstration test proved that less water was required to pump the in situ grout formulation than had been previously tested in the laboratory. The previous in situ grout formulation was restandardized with the same relative amounts of dry blend ingredients, albeit adding a fluidized admixture, but specifying less water for the slurry mix that must by pumped through the nozzles at high pressure. Also, the target GAAT tank for demonstrating this is situ grouting technique has been shifted to Tank TH4. A chemical surrogate sludge for TH4 was developed and tested in the laboratory, meeting expectations for leach resistance and strenght at 35 wt % sludge loading. It addition, a sample of hot TH4 sludge was also tested at 35 wt % sludge loading and proved to have superior strength and leach resistance compared with the surrogate test.
Date: April 1999
Creator: Hunt, R. D.; Kauschinger, J. L. & Spence, R. D.
Partner: UNT Libraries Government Documents Department

Grout and Glass Performance in Support of Stabilization/Solidification of the MVST Tank Sludges

Description: Wastewater at Oak Ridge National Laboratory (ORNL) is collected, evaporated, and stored in the Melton Valley Storage Tanks (MVST) pending treatment for disposal. The waste separates into two phases: sludge and supematant. Some of the supematant from these tanks has been decanted, solidified into a grout, and stored for disposal as a solid low-level waste. The sludges in the tank bottoms have been accumulating ,for several years. Some of the sludges contain a high amount of gamma activity (e.g., `37CS concentration range of 0.01 3-11 MBq/g) and contain enough transuranic (TRU) radioisotopes to be classified as TRU wastes. Some Resource Conservation and Recovery Act (RCRA) metal concentrations are high enough in the available total constituent analysis for the MVST sludge to be classified as RCRA hazardous; therefore, these sludges are presumed to be mixed TRU waste.
Date: November 1, 1998
Creator: Gilliam, T.M. & Spence, R.D.
Partner: UNT Libraries Government Documents Department

SLUDGE BATCH 4 FOLLOW-UP QUALIFICATION STUDIES TO EVALUATE HYDROGEN GENERATION

Description: Follow-up testing was conducted to better understand the excessive hydrogen generation seen in the initial Sludge Batch 4 (SB4) qualification Sludge Receipt and Adjustment Tank/Slurry Mix Evaporator (SRAT/SME) simulation in the Savannah River National Laboratory (SRNL) Shielded Cells. This effort included both radioactive and simulant work. The initial SB4 qualification test produced 0.59 lbs/hr hydrogen in the SRAT, which was just below the DWPF SRAT limit of 0.65 lbs/hr, and the test produced over 0.5 lbs/hr hydrogen in the SME cycle on two separate occasions, which were over the DWPF SME limit of 0.223 lbs/hr.
Date: August 23, 2007
Creator: Pareizs, J; David Koopman, D; Dan Lambert, D & Cj Bannochie, C
Partner: UNT Libraries Government Documents Department

Uranium Metal Reaction Behavior in Water, Sludge, and Grout Matrices

Description: This report summarizes information and data on the reaction behavior of uranium metal in water, in water-saturated simulated and genuine K Basin sludge, and in grout matrices. This information and data are used to establish the technical basis for metallic uranium reaction behavior for the K Basin Sludge Treatment Project (STP). The specific objective of this report is to consolidate the various sources of information into a concise document to serve as a high-level reference and road map for customers, regulators, and interested parties outside the STP (e.g., external reviewers, other DOE sites) to clearly understand the current basis for the corrosion of uranium metal in water, sludge, and grout.
Date: May 27, 2009
Creator: Delegard, Calvin H. & Schmidt, Andrew J.
Partner: UNT Libraries Government Documents Department

Testing of sludge coating adhesiveness on fuel elements in 105-K west basin

Description: This report summarizes the results from the first sludge adherence tests performed in the 105-K West Basin on N Reactor fuel. The outside surface of the outer fuel elements were brushed, using stainless steel wire brushes, to test the adhesiveness of various types of sludge coatings to the cladding`s surface. The majority of the sludge was removed by the wire brushes in this test but different types of sludge were more adhesive than others. Particularly, an orange rust-like sludge coating that was just slightly more adherent to the fuel`s cladding than the majority of the sludge coatings and a thick white vertical strip sludge coating that was much more difficult to remove. The test demonstrated that all of the sludge could be removed from the outer fuel elements` surfaces if the need arises.
Date: March 11, 1997
Creator: Maassen, D.P., Fluor Daniel Hanford
Partner: UNT Libraries Government Documents Department

Life-cycle cost and impacts: alternatives for managing KE basin sludge

Description: This document presents the results of a life-cycle cost and impacts evaluation of alternatives for managing sludge that will be removed from the K Basins. The two basins are located in the 100-K Area of the Hanford Site. This evaluation was conducted by Fluor Daniel Hanford, Inc. (FDH) and its subcontractors to support decisions regarding the ultimate disposition of the sludge. The long-range plan for the Hanford Site calls for spent nuclear fuel (SNF), sludge, debris, and water to be removed from the K East (KE) and K West (KW) Basins. This activity will be conducted as a removal action under the Comprehensive Environmental Response, Compensation, and Liability Act of 1980 (CERCLA). The scope of the CERCLA action will be limited to removing the SNF, sludge, debris, and water from the basins and transferring them to authorized facilities for interim storage and/or treatment and disposal. The scope includes treating the sludge and water in the 100-K Area prior to the transfer. Alternatives for the removal action are evaluated in a CERCLA engineering evaluation/cost analysis (EE/CA) and include different methods for managing sludge from the KE Basins. The scope of the removal action does not include storing, treating, or disposing of the sludge once it is transferred to the receiving facility and the EE/CA does not evaluate those downstream activities. This life-cycle evaluation goes beyond the EE/CA and considers the full life-cycle costs and impacts of dispositioning sludge.
Date: June 27, 1997
Creator: Alderman, C.J.
Partner: UNT Libraries Government Documents Department

Analysis of sludge from K East basin floor and weasel pit

Description: Sludge samples from the floor of the Hanford K East Basin fuel storage pool have been retrieved and analyzed. Both chemical and physical properties have been determined. The results are to be used to determine the disposition of the bulk of the sludge and possibly assess the impact of residual sludge on dry storage of the associated intact metallic uranium fuel elements.
Date: May 4, 1996
Creator: Makenas, B.J., Westinghouse Hanford
Partner: UNT Libraries Government Documents Department

Alkali Treatment of Acidic Solution from Hanford K Basin Sludge Dissolution

Description: Nitric acid solutions will be created from the dissolution of Hanford K Basin sludge. These acidic dissolver solutions must be made alkaline by treatment with NaOH solution before they are disposed to ~ the Tank Waste Remediation System on the Hanford Site. During the alkali treatments, sodium diuranate, hydroxides of iron and aluminum, and radioelements (uranium, plutonium, and americium) will precipitate from the dissolver solution. Laboratory tests, discussed here, were pefiormed to provide information on these precipitates and their precipitation behavior that is important in designing the engineering flowsheet for the treatment process. Specifically, experiments were conducted to determine the optimum precipitation conditions; the completeness of uranium, plutonium, and americium precipitation; the rate of sedimentation; and the physico-chemical characteristics of the solids formed by alkali treatment of simulated acidic dissolver solutions. These experiments also determined the redistribution of uranium, plutonium, and americium flom the sodium di~ate and iron and al&inurn hydroxide precipitates upon contact with carbonate- and EDTA-bearing simulated waste solutions. Note: EDTA is the tetrasodium salt of ethylenediaminetetraacetate.
Date: December 22, 1998
Creator: Bessonov, A. A.; Yusov, A. B.; Fedoseev, A. M.; Gelis, A. V.; Garnov, A. Y.; Delegard, C. H. et al.
Partner: UNT Libraries Government Documents Department

Suspending Insoluble Solids Waste Tanks with Shrouded Axial Impeller Mixers

Description: The Savannah River Site is in the process of removing waste (sludge and salt cake) from million gallon waste tanks. The authors are conducted a test program to determine mixer requirements for suspending sludge heels using shrouded axial impeller mixers. The authors will present and discuss the data generated during the tests.
Date: November 9, 1998
Creator: Poirier, M.R.
Partner: UNT Libraries Government Documents Department

Radioactive air emissions notice of construction 340-A

Description: This document serves as a notice of construction pursuant to the requirements of Washington Administrative Code (WAC) 246-247-060 and as a request for approval to construct pursuant to 40 Code of Federal Regulations (CFR) 61.96 for the removal of sludge from six storage tanks located inside the 340-A Building, which is located in the 300 Area of the Hanford Site.
Date: July 17, 1997
Creator: Hays, C.B.
Partner: UNT Libraries Government Documents Department

K Basins sludge removal temporary sludge storage tank system

Description: Shipment of sludge from the K Basins to a disposal site is now targeted for August 2000. The current path forward for sludge disposal is shipment to Tank AW-105 in the Tank Waste Remediation System (TWRS). Significant issues of the feasibility of this path exist primarily due to criticality concerns and the presence of polychlorinated biphenyls (PCBS) in the sludge at levels that trigger regulation under the Toxic Substance Control Act. Introduction of PCBs into the TWRS processes could potentially involve significant design and operational impacts to both the Spent Nuclear Fuel and TWRS projects if technical and regulatory issues related to PCB treatment cannot be satisfactorily resolved. Concerns of meeting the TWRS acceptance criteria have evolved such that new storage tanks for the K Basins sludge may be the best option for storage prior to vitrification of the sludge. A reconunendation for the final disposition of the sludge is scheduled for June 30, 1997. To support this decision process, this project was developed. This project provides a preconceptual design package including preconceptual designs and cost estimates for the temporary sludge storage tanks. Development of cost estimates for the design and construction of sludge storage systems is required to help evaluate a recommendation for the final disposition of the K Basin sludge.
Date: June 12, 1997
Creator: Mclean, M.A.
Partner: UNT Libraries Government Documents Department

Assessment of the quantities and distribution of K East Basin floor sludge constituents

Description: Floor sludge constituent masses and their spatial distribution within K East Basin were calculated. This information will be beneficial in the assessing the acceptability of K Basin sludge in the Tank Waste Remediation System and in the design and/or operational practices related to retrieval and handling of this K Basin sludge. Calculations were made based on results from recent laboratory chemical and radionuclides analyses of sludge sampled from thirteen locations in K East main basin. This concentration data was mathematically processed to determine the various constituents concentration distribution throughout the basin floor. This data was further processed, along with data previously generated from the analysis of measured sludge depths, to give both basin total masses and associated spatial distribution of the various sludge constituents. Results of these calculations, showed that the major gravimetric constituents of the sludge are iron (1505 kg), uranium (1387 kg), aluminum, sodium and c2@15cium. Significant amounts of fissionable materials were also calculated: u (9.92 kg) and 239pU (3.42 kg). The calculated distribution of sludge constituent masses showed distinct patterns. Sludge constituent associated with corroded spent nuclear fuel were concentrated near the north-west corner of the basin. Aluminum and iron, and many other elements are mainly located near the mouth of the South Load Out Pit. A value of 10,200 Ci of alpha (5%) + beta (95%) radioactivity was calculated for the total basin floor sludge, and was concentrated near the north-west corner of the basin and near the Dummy Elevator Pit.
Date: October 1, 1996
Creator: Hecht, S.L.
Partner: UNT Libraries Government Documents Department

K basins sludge removal sludge pretreatment system

Description: The Spent Nuclear Fuels Program is in the process of planning activities to remove spent nuclear fuel and other materials from the 100-K Basins as a remediation effort for clean closure. The 105 K- East and K-West Basins store spent fuel, sludge, and debris. Sludge has accumulated in the 1 00 K Basins as a result of fuel oxidation and a slight amount of general debris being deposited, by settling, in the basin water. The ultimate intent in removing the sludge and fuel is to eliminate the environmental risk posed by storing fuel at the K Basins. The task for this project is to disposition specific constituents of sludge (metallic fuel) to produce a product stream through a pretreatment process that will meet the requirements, including a final particle size acceptable to the Tank Waste Remediation System (TWRS). The purpose of this task is to develop a preconceptual design package for the K Basin sludge pretreatment system. The process equipment/system is at a preconceptual stage, as shown in sketch ES-SNF-01 , while a more refined process system and material/energy balances are ongoing (all sketches are shown in Appendix C). Thus, the overall process and 0535 associated equipment have been conservatively selected and sized, respectively, to establish the cost basis and equipment layout as shown in sketches ES- SNF-02 through 08.
Date: June 12, 1997
Creator: Chang, H.L.
Partner: UNT Libraries Government Documents Department