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Models for evaluation of energy technology and policy options to maximize low carbon source penetration in the United States energy supply.

Description: An initial version of a Systems Dynamics (SD) modeling framework was developed for the analysis of a broad range of energy technology and policy questions. The specific question selected to demonstrate this process was 'what would be the carbon and import implications of expanding nuclear electric capacity to provide power for plug in hybrid vehicles?' Fifteen SNL SD energy models were reviewed and the US Energy and Greenhouse gas model (USEGM) and the Global Nuclear Futures model (GEFM) were identified as the basis for an initial modeling framework. A basic U.S. Transportation model was created to model U.S. fleet changes. The results of the rapid adoption scenario result in almost 40% of light duty vehicles being PHEV by 2040 which requires about 37 GWy/y of additional electricity demand, equivalent to about 25 new 1.4 GWe nuclear plants. The adoption rate of PHEVs would likely be the controlling factor in achieving the associated reduction in carbon emissions and imports.
Date: December 1, 2009
Creator: Pickard, Paul S.; Kataoka, Dawn; Reno, Marissa Devan; Malczynski, Leonard A.; Peplinski, William J.; Roach, Jesse D. et al.
Partner: UNT Libraries Government Documents Department

Assessment of Contribution of Contemporary Carbon Sources to Size-Fractionated Particulate Matter and Time-Resolved Bulk Particulate Matter Using the Measurement of Radiocarbon

Description: This study was motivated by a desire to improve understanding of the sources contributing to the carbon that is an important component of airborne particulate matter (PM). The ultimate goal of this project was to lay a ground work for future tools that might be easily implemented with archived or routinely collected samples. A key feature of this study was application of radiocarbon measurement that can be interpreted to indicate the relative contributions from fossil and non-fossil carbon sources of atmospheric PM. Size-resolved PM and time-resolved PM{sub 10} collected from a site in Sacramento, CA in November 2007 (Phase I) and March 2008 (Phase II) were analyzed for radiocarbon and source markers such as levoglucosan, cholesterol, and elemental carbon. Radiocarbon data indicates that the contributions of non-fossil carbon sources were much greater than that from fossil carbon sources in all samples. Radiocarbon and source marker measurements confirm that a greater contribution of non-fossil carbon sources in Phase I samples was highly likely due to residential wood combustion. The present study proves that measurement of radiocarbon and source markers can be readily applied to archived or routinely collected samples for better characterization of PM sources. More accurate source apportionment will support ARB in developing more efficient control strategies.
Date: April 16, 2009
Creator: Hwang, H M; Young, T M & Buchholz, B A
Partner: UNT Libraries Government Documents Department

Southeast Regional Carbon Sequestration Partnership (SECARB)

Description: Work during the first six months of the project mainly concentrated on contracts execution and collection of data to characterize the region and input of that data into the geographical information system (GIS) system. Data was collected for source characterization, transportation options and terrestrial options. In addition, discussions were held to determine the extent of the geologic information that would be needed for the project. In addition, activities associated with the regulatory, permitting and safety issues were completed. Outreach activities are in the formative stages.
Date: March 31, 2004
Creator: Baskin, Kathryn A.
Partner: UNT Libraries Government Documents Department

Relative Contributions of Fossil and Contemporary Carbon sources to PM 2.5 Aerosols at Nine IMPROVE Network Sites

Description: Particulate matter aerosols contribute to haze diminishing vistas and scenery at National Parks and Wilderness Areas within the United States. To increase understanding of the sources of carbonaceous aerosols at these settings, the total carbon loading and {sup 14}C/C ratio of PM 2.5 aerosols at nine IMPROVE (Interagency Monitoring for Protection Of Visual Environments) network sites were measured. Aerosols were collected weekly in the summer and winter at one rural site, two urban sites, five sites located in National Parks and one site located in a Wildlife Preserve. The carbon measurements together with the absence of {sup 14}C in fossil carbon materials and the known {sup 14}C/C levels in contemporary carbon materials were used to derive contemporary and fossil carbon contents of the particulate matter. Contemporary and fossil carbon aerosol loadings varied across the sites and suggest different percentages of carbon source inputs. The urban sites had the highest fossil carbon loadings that comprised around 50% of the total carbon aerosol loading. The Wildlife Preserve and National Park sites together with the rural site had much lower fossil carbon loading components. At these sites, variations in the total carbon aerosol loading were dominated by non-fossil carbon sources. This suggests that reduction of anthroprogenic sources of fossil carbon aerosols may result in little decrease in carbonaceous aerosol loading at many National Parks and rural areas.
Date: June 26, 2006
Creator: Bench, G; Fallon, S; Schichtel, B; Malm, W & McDade, C
Partner: UNT Libraries Government Documents Department

Soil aggregate stabilization and carbon sequestration: Feedbacks through organomineral associations

Description: Primary production (specifically, the rate and quality of C transfer below ground) and soil microbial activity (specifically, the rates of C transformation and decay) are recognized as the overall biological processes governing soil organic C (SOC) dynamics. These two processes and, hence, SOC cycling and storage are controlled by complex underlying biotic and abiotic interactions and feedbacks, most of which can be tied in one way or another to the influences of the five state factors related to soil formation, and many of which are sensitive to management practices. Overall, C input rates and quality are largely dependent on climate (especially temperature and precipitation), vegetation type and landscape, soil type, and management practices. Decomposition processes and turnover rates, however, are greatly influenced by climate, the type and quality of organic matter (e.g., N content and the ratios of C:N and lignin:N), chemical or physicochemical associations of organic matter (OM) with soil mineral components, and the location of OM within the soil.
Date: December 31, 1996
Creator: Jastrow, J.D. & Miller, R.M.
Partner: UNT Libraries Government Documents Department

Mechanisms of dissolved organic carbon cycling in an ocean margin. Final technical report

Description: Dissolved organic carbon (DOC) is the largest reservoir of organic carbon in the ocean, and the objectives of this project were to investigate the mechanisms and pathways of DOC formation and consumption in seawater. Carbohydrates are the most abundant form of DOC, and this project included measurements of dissolved carbohydrates as well as DOC to help delineate the cycling of DOC. Many of the methods and approaches for investigating DOC production were developed as part of this project.
Date: November 24, 1997
Creator: Benner, R.
Partner: UNT Libraries Government Documents Department


Description: The Lab for Energy and Environment (LFEE) at MIT is developing a Geographic Information System (GIS) for carbon management. The GIS will store, integrate, and manipulate information relating to the components of carbon management systems. Additionally, the GIS can be used to interpret and analyze the effect of developing these systems. In the first year of this three year project, we focused on two tasks: (1) specifying the system design--defining in detail the GIS data requirements, the types of analyses that can be conducted, and the forms of output we will produce, as well as designing the computer architecture of the GIS and (2) creating the ''core'' datasets--identifying data sources and converting them into a form accessible by the GIS.
Date: March 1, 2004
Creator: Herzog, Howard J.
Partner: UNT Libraries Government Documents Department

Top Value-Added Chemicals from Biomass - Volume II—Results of Screening for Potential Candidates from Biorefinery Lignin

Description: This report evaluates lignin’s role as a renewable raw material resource. Opportunities that arise from utilizing lignin fit into one of three categories: 1)power, fuel and syngas (generally near-term opportunities) 2) macromolecules (generally medium-term opportunities) 3) aromatics and miscellaneous monomers (long-term opportunities). Biorefineries will receive and process massive amounts of lignin. For this reason, how lignin can be best used to support the economic health of the biorefinery must be defined. An approach that only considers process heat would be shortsighted. Higher value products present economic opportunities and the potential to significantly increase the amount of liquid transportation fuel available from biomass. In this analysis a list of potential uses of lignin was compiled and sorted into “product types” which are broad classifications (listed above as power—fuel—syngas; macromolecules; and aromatics). In the first “product type” (power—fuel—gasification) lignin is used purely as a carbon source and aggressive means are employed to break down its polymeric structure. In the second “product type” (macromolecules) the opposite extreme is considered and advantage of the macromolecular structure imparted by nature is retained in high-molecular weight applications. The third “product type” (aromatics) lies somewhere between the two extremes and employs technologies that would break up lignin’s macromolecular structure but maintain the aromatic nature of the building block molecules. The individual opportunities were evaluated based on their technical difficulty, market, market risk, building block utility, and whether a pure material or a mixture would be produced. Unlike the “Sugars Top 10” report it was difficult to identify the ten best opportunities, however, the potential opportunities fell nicely into near-, medium- and long-term opportunities. Furthermore, the near-, medium- and long-term opportunities roughly align with the three “product types.” From this analysis a list of technical barriers was developed which can be used to identify research needs. Lignin presents ...
Date: October 1, 2007
Creator: Holladay, John E.; White, James F.; Bozell, Joseph J. & Johnson, David
Partner: UNT Libraries Government Documents Department

Strategies for enhancing the effectiveness of metagenomic-based enzyme discovery in lignocellulytic microbial communities

Description: Producing cellulosic biofuels from plant material has recently emerged as a key U.S. Department of Energy goal. For this technology to be commercially viable on a large scale, it is critical to make production cost efficient by streamlining both the deconstruction of lignocellulosic biomass and fuel production. Many natural ecosystems efficiently degrade lignocellulosic biomass and harbor enzymes that, when identified, could be used to increase the efficiency of commercial biomass deconstruction. However, ecosystems most likely to yield relevant enzymes, such as tropical rain forest soil in Puerto Rico, are often too complex for enzyme discovery using current metagenomic sequencing technologies. One potential strategy to overcome this problem is to selectively cultivate the microbial communities from these complex ecosystems on biomass under defined conditions, generating less complex biomass-degrading microbial populations. To test this premise, we cultivated microbes from Puerto Rican soil or green waste compost under precisely defined conditions in the presence dried ground switchgrass (Panicum virgatum L.) or lignin, respectively, as the sole carbon source. Phylogenetic profiling of the two feedstock-adapted communities using SSU rRNA gene amplicon pyrosequencing or phylogenetic microarray analysis revealed that the adapted communities were significantly simplified compared to the natural communities from which they were derived. Several members of the lignin-adapted and switchgrass-adapted consortia are related to organisms previously characterized as biomass degraders, while others were from less well-characterized phyla. The decrease in complexity of these communities make them good candidates for metagenomic sequencing and will likely enable the reconstruction of a greater number of full length genes, leading to the discovery of novel lignocellulose-degrading enzymes adapted to feedstocks and conditions of interest.
Date: March 1, 2010
Creator: DeAngelis, K.M.; Gladden, J.G.; Allgaier, M.; D'haeseleer, P.; Fortney, J.L.; Reddy, A. et al.
Partner: UNT Libraries Government Documents Department

Climate implications of carbonaceous aerosols: An aerosol microphysical study using the GISS/MATRIX climate model

Description: Recently, attention has been drawn towards black carbon aerosols as a likely short-term climate warming mitigation candidate. However the global and regional impacts of the direct, cloud-indirect and semi-direct forcing effects are highly uncertain, due to the complex nature of aerosol evolution and its climate interactions. Black carbon is directly released as particle into the atmosphere, but then interacts with other gases and particles through condensation and coagulation processes leading to further aerosol growth, aging and internal mixing. A detailed aerosol microphysical scheme, MATRIX, embedded within the global GISS modelE includes the above processes that determine the lifecycle and climate impact of aerosols. This study presents a quantitative assessment of the impact of microphysical processes involving black carbon, such as emission size distributions and optical properties on aerosol cloud activation and radiative forcing. Our best estimate for net direct and indirect aerosol radiative forcing change is -0.56 W/m{sup 2} between 1750 and 2000. However, the direct and indirect aerosol effects are very sensitive to the black and organic carbon size distribution and consequential mixing state. The net radiative forcing change can vary between -0.32 to -0.75 W/m{sup 2} depending on these carbonaceous particle properties. Assuming that sulfates, nitrates and secondary organics form a coating shell around a black carbon core, rather than forming a uniformly mixed particles, changes the overall net radiative forcing from a negative to a positive number. Black carbon mitigation scenarios showed generally a benefit when mainly black carbon sources such as diesel emissions are reduced, reducing organic and black carbon sources such as bio-fuels, does not lead to reduced warming.
Date: April 9, 2010
Creator: Bauer, Susanne E.; Menon, Surabi; Koch, Dorothy; Bond, Tami & Tsigaridis, Kostas
Partner: UNT Libraries Government Documents Department

Worldwide organic soil carbon and nitrogen data

Description: The objective of the research presented in this package was to identify data that could be used to estimate the size of the soil organic carbon pool under relatively undisturbed soil conditions. A subset of the data can be used to estimate amounts of soil carbon storage at equilibrium with natural soil-forming factors. The magnitude of soil properties so defined is a resulting nonequilibrium values for carbon storage. Variation in these values is due to differences in local and geographic soil-forming factors. Therefore, information is included on location, soil nitrogen content, climate, and vegetation along with carbon density and variation.
Date: September 1, 1986
Creator: Zinke, P.J.; Stangenberger, A.G.; Post, W.M.; Emanual, W.R. & Olson, J.S.
Partner: UNT Libraries Government Documents Department


Description: The PCOR Partnership is off to a very exciting and ambitious start. Task 1 activities have included the planning and execution of an internal kickoff meeting, participation in the DOE's national kickoff meeting, and the planning and execution of the first meeting of the PCOR Partnership at the Energy & Environmental Research Center (EERC). Task 2 activities have focused on developing effective and critical partnerships. A plan has been developed to utilize Dakota Gasification Company's (DGC) experience and data with respect to their participation in the enhanced oil recovery project at Weyburn, Saskatchewan. A solid line of communication has been developed with the Interstate Oil & Gas Compact Commission (IOGCC) for the mutual benefit of the PCOR Partnership and IOGCC's compensatory efforts. Task 3 activities have been focused on developing a foundation of background materials in order to avoid a duplication of efforts and provide the best outreach and educational materials possible. Progress in Task 4, Characterization and Evaluation, has included the development of a database format, the preliminary collection of data regarding CO{sub 2} sources and sinks, and data on the performance and costs for CO{sub 2} separation, capture, and treatment to prepare the fluid for pipeline transportation. Task 5 activities have resulted in a conceptual model for screening and qualitatively assessing sequestration options. Task 5 activities have also been useful in structuring data collection and other activities in Tasks 2, 3, and 5.
Date: January 1, 2004
Creator: Erickson, Thomas A.
Partner: UNT Libraries Government Documents Department

Simulation of the carbon cycle in the oceans. Annual report, Third year, September 15, 1992--September 14, 1993

Description: In this report, the authors conclude that the average oceanic uptake of anthropogenic CO{sub 2}, as determined from four different ocean models and normalized to the observed mean penetration depth of bomb{sup {minus}1} {sup 4}C (analogue to anthropogenic CO{sub 2}), is 2.0 {plus_minus} 0.5 GtC/yr (decade 1980--1989). This oceanic uptake plus the year-to-year growth of the atmospheric CO{sub 2} content together are less by 1.8 {plus_minus} 1.2 GtC/yr than the estimated anthropogenic CO{sub 2} emissions from fossil fuels and land use.
Date: October 1, 1993
Creator: Siegenthaler, U.
Partner: UNT Libraries Government Documents Department

Seasonal study of carbon dioxide in the southern extreme of the pacific sector, Antarctic Ocean. Progress report

Description: This report describes the progress made during the six-month period between December 1, 1993, when this grant was awarded, and May 1, 1994. The major aim of this investigation is to measure the distribution of the total CO{sub 2} concentration and pCO{sub 2} in seawater in the Pacific sector of the extreme Southern Ocean as far south as 78{degrees}S. The areas investigated include the continental shelf areas in the Ross, Amundsen and Bellingshausen Seas ad the off-shore deep water areas as far north as 67{degrees}S. The measurements were made aboard the R/VIB Nathaniel B. Palmer between February 14, 1994 and April 5, 1994, and the preliminary results are briefly described in this report. This expedition constitutes the first of a pair expeditions. The first is designed investigate oceanic CO{sub 2} sink/source conditions during the austral summer The second expedition, which is designed for the following winter, has been scheduled for September, 1994.
Date: May 5, 1994
Creator: Takahashi, Taro; Goddard, J. G.; Rubin, S. I. & Breger, D.
Partner: UNT Libraries Government Documents Department

Environmental Actinide Mobility: Plutonium and Uranium Interactions with Exopolysaccharides and Siderophores of Aerobic Soil Microbes

Description: Research efforts into understanding the effect of siderophores and capsules on actinide speciation and resultant environmental behavior are ongoing. Investigations on both siderophores have progressed. The redox chemistry of Pu(VI) and Pu(V) with DFO under acidic conditions was examined by UV-Vis and NMR spectroscopies. Pu(VI) was instantly reduced to Pu(V) by DFO and DFO cleavage resulted. Neither DFO nor the cleavage product appeared to coordinate with Pu(V) in the pH range examined. Growth of S. pilosus for cellular translocation experiments was optimized and experiments to determine DFO-mediated uranium uptake by S. pilosus are underway. OFS siderophore(s) production has been optimized and product identification is underway. Siderophore-like molecules were positive for the Arnow assay and had UV absorbance bands at 250nm and 315nm, suggesting catecholates-type molecules. Siderophores were produced with C13 - C16 as carbon source in AM-1 salts medium with 1.0mM iron. Siderophore accumulation was slowest on C13 due to the slower growth of OFS on this substrate. The C16 concentration in the culture influenced siderophore production, with highest levels at 1.0% and 2.0%.
Date: June 1, 2001
Creator: Neu, Mary P. & Vanderberg, Laura
Partner: UNT Libraries Government Documents Department

Enhancement of Biogenic Coalbed Methane Production and Back Injection of Coalbed Methane Co-Produced Water

Description: Biogenic methane is a common constituent in deep subsurface environments such as coalbeds and oil shale beds. Coalbed methane (CBM) makes significant contributions to world natural gas industry and CBM production continues to increase. With increasing CBM production, the production of CBM co-produced water increases, which is an environmental concern. This study investigated the feasibility in re-using CBM co-produced water and other high sodic/saline water to enhance biogenic methane production from coal and other unconventional sources, such as oil shale. Microcosms were established with the selected carbon sources which included coal, oil shale, lignite, peat, and diesel-contaminated soil. Each microcosm contained either CBM coproduced water or groundwater with various enhancement and inhibitor combinations. Results indicated that the addition of nutrients and nutrients with additional carbon can enhance biogenic methane production from coal and oil shale. Methane production from oil shale was much greater than that from coal, which is possibly due to the greater amount of available Dissolved Organic Carbon (DOC) from oil shale. Inconclusive results were observed from the other sources since the incubation period was too low. WRI is continuing studies with biogenic methane production from oil shale.
Date: May 31, 2007
Creator: Jin, Song
Partner: UNT Libraries Government Documents Department

Comprehensive Measurements and Modeling of SOL, and Core Plasma Fueling and Carbon Sources in DIII-D

Description: Plasma boundary modeling of low density, low confinement plasmas in DIII-D has been benchmarked against a comprehensive set of measurements and indicates that recycling of deuterium ions at the divertor targets, and chemical sputtering at the divertor target plates and walls, can explain the poloidal core fueling profile and core carbon density. Key measurements included the 2-D intensity distribution of deuterium neutral and low-charge state carbon emission in the divertor and around the midplane of the high-field scrape-off layer (SOL). Chemical sputtering plays an important role in producing carbon at the divertor targets and walls, and was found to be a prerequisite to reproduce the measured emission distribution.
Date: June 24, 2005
Creator: Groth, M.; Porter, G.; Bray, B.; Brooks, N.; Fenstermacher, M.; Groebner, R. et al.
Partner: UNT Libraries Government Documents Department

D-Area Sulfate Reduction Studty Comprehensive Final Report

Description: An acidic/metals/sulfate, groundwater contaminant plume emanates from the D-Area Coal Pile Runoff Basin (DCPRB) at the Savannah River Site (SRS), due to the contaminated runoff the basin receives from the D-Area coal pile. A Treatability Study Work Plan (TSWP) (WSRC 2001) was implemented to evaluate the potential for the sulfate reduction remediation of the DCPRB acidic/metals/sulfate, groundwater contaminant plume. The following studies, implemented as part of the TSWP, are documented herein: Bacteria Population and Organic Selection Laboratory Testing; DTT-1 Trench Evaluation; DIW-1 Organic Application Field Study-Part 1; and DIW-1 Organic Application Field Study-Part 2. Evaluation of sulfate reduction applicability actually began with a literature search and feasibility report in mid 2001, which fed into the TSWP. Physical completion of TSWP work occurred in late 2004 with the completion of the DIW-1 Organic Application Field Study-Part 2. The following are the primary conclusions drawn based upon this 3-year effort: (1) Pure soybean oil provides a long-term, indirect, SRB carbon source that floats on top of the water table (by indirect it means that the soybean oil must be degraded by other microbes prior to utilization by SRB) for the promotion of sulfate reduction remediation. Soybean oil produces no known SRB inhibitory response and therefore large quantities can be injected. (2) Sodium lactate provides a short-term, immediately available, direct, SRB carbon source that is miscible with the groundwater and therefore flows with the groundwater until it has been completely utilized for the promotion of sulfate reduction remediation. Lactate at elevated concentrations (greater than 6 g/L) does produce a SRB inhibitory response and therefore small quantities must be injected frequently. (3) The use of limestone to buffer the contaminated groundwater facilitates sulfate reduction remediation through the injection of organic substrate. Additionally conclusions and recommendations are made in Sections 8 and 9 regarding continuation ...
Date: February 11, 2005
Creator: Phifer, M
Partner: UNT Libraries Government Documents Department


Description: This project developed methodology and field deployable tools (test kits) to analyze the chemical and microbiological condition of the fuel storage medium and determine the oxide thickness on the spent fuel basin materials. The overall objective of this project was to determine the amount of time fuel has spent in a storage basin to determine if the operation of the reactor and storage basin is consistent with safeguard declarations or expectations. This project developed and validated forensic tools that can be used to predict the age and condition of spent nuclear fuels stored in liquid basins based on key physical, chemical and microbiological basin characteristics. Key parameters were identified based on a literature review, the parameters were used to design test cells for corrosion analyses, tools were purchased to analyze the key parameters, and these were used to characterize an active spent fuel basin, the Savannah River Site (SRS) L-Area basin. The key parameters identified in the literature review included chloride concentration, conductivity, and total organic carbon level. Focus was also placed on aluminum based cladding because of their application to weapons production. The literature review was helpful in identifying important parameters, but relationships between these parameters and corrosion rates were not available. Bench scale test systems were designed, operated, harvested, and analyzed to determine corrosion relationships between water parameters and water conditions, chemistry and microbiological conditions. The data from the bench scale system indicated that corrosion rates were dependent on total organic carbon levels and chloride concentrations. The highest corrosion rates were observed in test cells amended with sediment, a large microbial inoculum and an organic carbon source. A complete characterization test kit was field tested to characterize the SRS L-Area spent fuel basin. The sampling kit consisted of a TOC analyzer, a YSI multiprobe, and a thickness probe. ...
Date: June 4, 2012
Creator: Berry, T.; Milliken, C.; Martinez-Rodriguez, M.; Hathcock, D. & Heitkamp, M.
Partner: UNT Libraries Government Documents Department

Issues Impacting Refractory Service Life in Biomass/Waste Gasification

Description: Different carbon sources are used, or are being considered, as feedstock for gasifiers; including natural gas, coal, petroleum coke, and biomass. Biomass has been used with limited success because of issues such as ash impurity interactions with the refractory liner, which will be discussed in this paper.
Date: March 1, 2007
Creator: Bennett, J.P.; Kwong, K.-S. & Powell, C.A.
Partner: UNT Libraries Government Documents Department

Bio-Engineering High Performance Microbial Strains for MEOR

Description: The main objectives of this three-year research project are: (1) to employ the latest advances in genetics and bioengineering, especially Directed Protein Evolution technology, to improve the effectiveness of the microbial enhanced oil recovery (MEOR) process. (2) to improve the surfactant activity and the thermal stability of bio-surfactant systems for MEOR; and (3) to develop improved laboratory methods and tools that screen quickly candidate bio-systems for EOR. Biosurfactants have been receiving increasing attention as Enhanced Oil Recovery (EOR) agents because of their unique properties (i.e., mild production conditions, lower toxicity, and higher biodegradability) compared to their synthetic chemical counterparts. Rhamnolipid as a potent natural biosurfactant has a wide range of potential applications, including EOR and bioremediation. During the three-year of the project period, we have successfully cloned the genes involved in the rhamnolipid bio-synthesis. And by using the Transposon containing Rhamnosyltransferase gene rhlAB, we engineered the new mutant strains P. aeruginosa PEER02 and E. coli TnERAB so they can produce rhamnolipid biosurfactans. We were able to produce rhamnolipds in both P. aeroginosa PAO1-RhlA- strain and P. fluorescens ATCC15453 strain, with the increase of 55 to 175 fold in rhamnolipid production comparing with wild type bacteria strain. We have also completed the first round direct evolution studies using Error-prone PCR technique and have constructed the library of RhlAB-containing Transposon to express mutant gene in heterologous hosts. Several methods, such as colorimetric agar plate assay, colorimetric spectrophotometer assay, bioactive assay and oil spreading assay have been established to detect and screen rhamnolipid production. Our engineered P. aeruginosa PEER02 strain can produce rhamnolipids with different carbon sources as substrate. Interfacial tension analysis (IFT) showed that different rhamnolipids from different substrates gave different performance. Those rhamnolipids with plant oil as substrate showed as low an IFT as 0.05mN/m in the buffer solution with pH5.0 ...
Date: December 30, 2007
Creator: Fang, Xiangdong; Wang, Qinghong & Shuler, Patrick
Partner: UNT Libraries Government Documents Department

The Shewanella oneidensis MR-1 Fluxome under Various OxygenConditions

Description: The central metabolic fluxes of Shewanella oneidensis MR-1were examined under carbon-limited (aerobic) and oxygen-limited(micro-aerobic) chemostat conditions using 13C labeled lactate as thesole carbon source. The carbon labeling patterns of key amino acids inbiomass were probed using both GC-MS and 13C-NMR. Based on the genomeannotation, a metabolic pathway model was constructed to quantify thecentral metabolic flux distributions. The model showed that thetricarboxylic acid (TCA) cycle is the major carbon metabolism route underboth conditions. The Entner-Doudoroff and pentose phosphate pathways weremainly utilized for biomass synthesis (flux below 5 percent of thelactate uptake rate). The anapleurotic reactions (pyruvate to malate andoxaloacetate to phosphoenolpyruvate) and the glyoxylate shunt wereactive. Under carbon-limited conditions, a substantial amount of carbonwas oxidized via the highly reversible serine metabolic pathway. Fluxesthrough the TCA cycle were less whereas acetate production was more underoxygen limitation than under carbon limitation. Although fluxdistributions under aerobic, micro-aerobic, and shake-flask cultureconditions were dramatically different, the relative flux ratios of thecentral metabolic reactions did not vary significantly. Hence, S.oneidensis metabolism appears to be quite robust to environmentalchanges. Our study also demonstrates the merit of coupling GC-MS with 13CNMR for metabolic flux analysis to reduce the use of 13C labeledsubstrates and to obtain more accurate flux values.
Date: March 17, 2006
Creator: Tang, Yinjie J.; Hwang, Judy S.; Wemmer, David E. & Keasling, Jay D.
Partner: UNT Libraries Government Documents Department