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- Density Functional Theory/A Practical Introduction
- No Description Available.
- FCC Record, Volume 24, No. 1, Pages 1 to 856, January 2 - January 16, 2009
- Biweekly, comprehensive compilation of decisions, reports, public notices, and other documents of the U.S. Federal Communications Commission.
- FCC Record, Volume 24, No. 8, Pages 6185 to 7016, Supplement (2009)
- Biweekly, comprehensive compilation of decisions, reports, public notices, and other documents of the U.S. Federal Communications Commission.
- Genome Sequence Databases (Overview): Sequencing and Assembly
- From the date its role in heredity was discovered, DNA has been generating interest among scientists from different fields of knowledge: physicists have studied the three dimensional structure of the DNA molecule, biologists tried to decode the secrets of life hidden within these long molecules, and technologists invent and improve methods of DNA analysis. The analysis of the nucleotide sequence of DNA occupies a special place among the methods developed. Thanks to the variety of sequencing technologies available, the process of decoding the sequence of genomic DNA (or whole genome sequencing) has become robust and inexpensive. Meanwhile the assembly of whole genome sequences remains a challenging task. In addition to the need to assemble millions of DNA fragments of different length (from 35 bp (Solexa) to 800 bp (Sanger)), great interest in analysis of microbial communities (metagenomes) of different complexities raises new problems and pushes some new requirements for sequence assembly tools to the forefront. The genome assembly process can be divided into two steps: draft assembly and assembly improvement (finishing). Despite the fact that automatically performed assembly (or draft assembly) is capable of covering up to 98% of the genome, in most cases, it still contains incorrectly assembled reads. The error rate of the consensus sequence produced at this stage is about 1/2000 bp. A finished genome represents the genome assembly of much higher accuracy (with no gaps or incorrectly assembled areas) and quality ({approx}1 error/10,000 bp), validated through a number of computer and laboratory experiments.
- Genomics of Secondary Metabolism in Populus: Interactions With Biotic and Abiotic Environments
- Populus trees face constant challenges from the environment during their life cycle. To ensure their survival and reproduction, Populus trees deploy various types of defenses, one of which is the production of a myriad of secondary metabolites. Compounds derived from the shikimate-phenylpropanoid pathway are the most abundant class of secondary metabolites synthesized in Populus. Among other major classes of secondary metabolites in Populus are terpenoids and fatty acid-derivatives. Some of the secondary metabolites made by Populus trees have been functionally characterized. Some others have been associated with certain biological/ecological processes, such as defense against insects and microbial pathogens or acclimation or adaptation to abiotic stresses. Functions of many Populus secondary metabolites remain unclear. The advent of various novel genomic tools will enable us to explore in greater detail the complexity of secondary metabolism in Populus. Detailed data mining of the Populus genome sequence can unveil candidate genes of secondary metabolism. Metabolomic analysis will continue to identify new metabolites synthesized in Populus. Integrated genomics that combines various omics tools will prove to be the most powerful approach in revealing the molecular and biochemical basis underlying the biosynthesis of secondary metabolites in Populus. Characterization of the biological/ecological functions of secondary metabolites as well as their biosynthesis will provide knowledge and tools for genetically engineering the production of seconday metabolites that can lead to the generation of novel, improved Populus varieties.
- Global Climate Change Impacts in the United States
- This book summarizes the science of climate change and the impacts of climate change on the United States, now and in the future. It is an authoritative scientific report written in plain language, with the goal of better informing public and private decision making at all levels.
- Industrial Applications Perspective of Nanodielectrics
- The field of nanodielectrics has had a significant impact on voltage endurance characteristics of electrical insulation. Improved time-to-breakdown behavior, resulting in reduced aging of insulation, and enhanced thermal stability are of considerable importance in industrial applications. This chapter discusses several specific aspects of nanodielectrics and their role in the future of electrical insulation and dielectric sciences.
- Proceedings of the 5th Annual Workshop on Cyber Security and Information Intelligence Research: Cyber Security and Information Intelligence Challenges and Strategies
- Our reliance on the cyber infrastructure has further grown and the dependencies have become more complex. The infrastructure and applications running on it are not generally governed by the rules of bounded systems and inherit the properties of unbounded systems, such as the absence of global control, borders and barriers. Furthermore, the quest for increasing functionality and ease of operation is often at the cost of controllability, potentially opening up avenues for exploitation and failures. Intelligence is information valued for its currency and relevance rather than its detail or accuracy. In the presence of information explosion, i.e., the pervasive abundance of (public/private) information and the effects of such, intelligence has the potential to shift the advantages in the dynamic game of defense and attacks in cyber space. Gathering, analyzing, and making use of information constitutes a business-/sociopolitical-/military-intelligence gathering activity and ultimately poses significant advantages and liabilities to the survivability of "our" society. The combination of increased vulnerability, increased stakes and increased threats make cyber security and information intelligence (CSII) one of the most important emerging challenges in the evolution of modern cyberspace. The goal of the workshop is to establish, debate and challenge the far-reaching agenda that broadly and comprehensively outlines a strategy for cyber security and information intelligence that is founded on sound principles and technologies.
- Proteomic Insights: Cryoadaption of Permafrost Bacteria
- The permafrost microbial community has been described as 'a community of survivors' (Friedman 1994). Because of the permanently cold condition and the long term isolation of the permafrost sediments, the permafrost microorganisms have acquired various adaptive features in the membrane, enzymes, and macromolecular synthesis. This chapter reviews the different adaptive mechanisms used by permafrost microorganisms with a focus on the proteomic level of cryoadaptation that have recently been identified during the low temperature growth in permafrost bacteria.
- Quantitative Assessment of Robot-generated Maps
- Mobile robotic mapping is now considered to be a sufficiently mature field with demonstrated successes in various domains. While much progress has been made in the development of computationally efficient and consistent mapping schemes, it is still murky, at best, on how these maps can be evaluated. We are motivated by the absence of an accepted standard for quantitatively measuring the performance of robotic mapping systems against user-defined requirements. It is our belief that the development of standardized methods for quantitatively evaluating existing robotic technologies will improve the utility of mobile robots in already established application areas, such as vacuum cleaning, robot surveillance, and bomb disposal. This approach will also enable the proliferation and acceptance of such technologies in emerging markets. This chapter summarizes our preliminary efforts by bringing together the research community towards addressing this important problem which has ramifications not only from researchers perspective but also from consumers, robot manufacturers, and developers viewpoints.
- A Simple Distributed Particle Swarm Optimization for Dynamic and Noisy Environments
- In this paper, we present a Simple Distributed Particle Swarm Optimization (SDPSO) algorithm that can be used to track the optimal solution in a dynamic and noisy environment. The classic PSO algorithm lacks the ability to track changing optimum in a dynamic environment. Several approaches have been investigated to enhance the PSO algorithm s ability in dynamic environments. However, in dealing with dynamic environments, these approaches have lost PSO s original strengths of decentralized control and ease of implementation. The SDPSO algorithm proposed in this paper maintains these classic PSO features as well as provides the optimum result tracking capability in dynamic environments. In this research, the DF1 multimodal dynamic environment generator proposed by Morrison and De Jong is used to evaluate the classic PSO, SDPSO and other two adaptive PSOs.
- Structure and Properties of Nanoparticles Formed by Ion Implantation
- This chapter broadly describes the formation, basic microstructure, and fundamental optoelectronic properties of nanocomposites synthesized by ion implantation. It is not meant as a complete literature survey and by no means includes all references on a subject that has seen a considerable amount of research effort in the past 15 years. However, it should be a good starting point for those new to the field and in a concise way summarize the main lines of research by discussing the optical, magnetic, and smart properties of these nanoparticles and the dependence of these properties on the overall microstructure. The chapter concludes with an outlook for the future.
- Terrestrial Carbon Sequestration - Science for Enhancement and Implementation
- It is time to re-evaluate all available options that might not be permanent yet have the potential to buy time, bridging to a future when new energy system technologies and a transformed energy infrastructure can fully address the climate challenge. Terrestrial sequestration is one option large enough to make a contribution in the coming decades using proven land management methods and with the possibility that new technologies could significantly enhance the opportunity. Here we review progress on key scientific, economic, and social issues; postulate the extent to which new technologies might significantly enhance terrestrial sequestration potential; and address remaining research needs.
- United States Reports, Volume 547: Cases Adjudged in The Supreme Court at October Term, 2005
- Volume of the United States Reports containing the final decisions and opinions of the Supreme Court justices regarding cases between February 28 and June 20, 2006. Also includes notes regarding the members of the Supreme Court, orders, and other relevant materials. Index starts on page 1289.
- United States Reports, Volume 548: Cases Adjudged in The Supreme Court at October Term, 2005
- Volume of the United States Reports containing the final decisions and opinions of the Supreme Court justices regarding cases between June 22 Through September 28, 2006. Also includes notes regarding the members of the Supreme Court, orders, and other relevant materials. Index starts on page 1307.
- United States Reports, Volume 549: Cases Adjudged in The Supreme Court at October Term, 2006
- Volume of the United States Reports containing the final decisions and opinions of the Supreme Court justices regarding cases between October 2, 2006, and April 16, 2007. Also includes notes regarding the members of the Supreme Court, orders, and other relevant materials. Index starts on page 1503.
- Viable Cyanobacteria and Green Algae from the Permafrost Darkness
- This review represents an overview of the existence, distribution and abundance of the photoautotrophic microorganisms in the deep subsurface permafrost of the Northeast Russia and McMurdo Dry Valleys, Antarctica. The morphology, growth rate, spectral properties, phylogenetic position of the viable permafrost green algae and cyanobacteria have been studied. Viable photoautotrophs were represented by unicellular green algae and filamentous cyanobacteria with low growth rate. Spectral studies of ancient cyanobacteria and green algae did not reveal any significant differences between them and their contemporary relatives. Phylogenetic analyses have shown that permafrost photoautotrophs were closely related to strains and more often to uncultured environmental clones from cold regions.
- Geochip: A high throughput genomic tool for linking community structure to functions
- GeoChip is a comprehensive functional gene array that targets key functional genes involved in the geochemical cycling of N, C, and P, sulfate reduction, metal resistance and reduction, and contaminant degradation. Studies have shown the GeoChip to be a sensitive, specific, and high-throughput tool for microbial community analysis that has the power to link geochemical processes with microbial community structure. However, several challenges remain regarding the development and applications of microarrays for microbial community analysis.
- FCC Record, Volume 24, No. 2, Pages 857 to 1611, January 19 - February 13, 2009
- Biweekly, comprehensive compilation of decisions, reports, public notices, and other documents of the U.S. Federal Communications Commission.
- FCC Record, Volume 24, No. 3, Pages 1612 to 2571, February 16 - February 26, 2009
- Biweekly, comprehensive compilation of decisions, reports, public notices, and other documents of the U.S. Federal Communications Commission.
- In situ groundwater bioremediation
- In situ groundwater bioremediation of hydrocarbons has been used for more than 40 years. Most strategies involve biostimulation; however, recently bioaugmentation have been used for dehalorespiration. Aquifer and contaminant profiles are critical to determining the feasibility and strategy for in situ groundwater bioremediation. Hydraulic conductivity and redox conditions, including concentrations of terminal electron acceptors are critical to determine the feasibility and strategy for potential bioremediation applications. Conceptual models followed by characterization and subsequent numerical models are critical for efficient and cost effective bioremediation. Critical research needs in this area include better modeling and integration of remediation strategies with natural attenuation.
- Mathematical models as tools for probing long-term safety of CO2 storage
- Subsurface reservoirs being considered for storing CO{sub 2} include saline aquifers, oil and gas reservoirs, and unmineable coal seams (Baines and Worden, 2004; IPCC, 2005). By far the greatest storage capacity is in saline aquifers (Dooley et al., 2004), and our discussion will focus primarily on CO{sub 2} storage in saline formations. Most issues for safety and security of CO{sub 2} storage arise from the fact that, at typical temperature and pressure conditions encountered in terrestrial crust, CO{sub 2} is less dense than aqueous fluids. Accordingly, CO{sub 2} will experience an upward buoyancy force in most subsurface environments, and will tend to migrate upwards whenever (sub-)vertical permeable pathways are available, such as fracture zones, faults, or improperly abandoned wells (Bachu, 2008; Pruess, 2008a, b; Tsang et al., 2008). CO{sub 2} injection will increase fluid pressures in the target formation, thereby altering effective stress distributions, and potentially triggering movement along fractures and faults that could increase their permeability and reduce the effectiveness of a caprock in containing CO{sub 2} (Rutqvist et al., 2008; Chiaramonte et al., 2008). Induced seismicity as a consequence of fluid injection is also a concern (Healy et al., 1968; Raleigh et al., 1976; Majer et al., 2007). Dissolution of CO{sub 2} in the aqueous phase generates carbonic acid, which may induce chemical corrosion (dissolution) of minerals with associated increase in formation porosity and permeability, and may also mediate sequestration of CO{sub 2} as solid carbonate (Gaus et al., 2008). Chemical dissolution of caprock minerals could promote leakage of CO{sub 2} from a storage reservoir (Gherardi et al., 2007). Chemical dissolution and geomechanical effects could reinforce one another in compromising CO{sub 2} containment. Additional issues arise from the potential of CO{sub 2} to mobilize hazardous chemical species (Kharaka et al., 2006), and from migration of the large amounts …
- MOLECULAR SPECTROSCPY AND REACTIONS OF ACTINIDES IN THE GAS PHASE AND CRYOGENIC MATRICES
- In this chapter we review the spectroscopic data for actinide molecules and the reaction dynamics for atomic and molecular actinides that have been examined in the gas phase or in inert cryogenic matrices. The motivation for this type of investigation is that physical properties and reactions can be studied in the absence of external perturbations (gas phase) or under minimally perturbing conditions (cryogenic matrices). This information can be compared directly with the results from high-level theoretical models. The interplay between experiment and theory is critically important for advancing our understanding of actinide chemistry. For example, elucidation of the role of the 5f electrons in bonding and reactivity can only be achieved through the application of experimentally verified theoretical models. Theoretical calculations for the actinides are challenging due the large numbers of electrons that must be treated explicitly and the presence of strong relativistic effects. This topic has been reviewed in depth in Chapter 17 of this series. One of the goals of the experimental work described in this chapter has been to provide benchmark data that can be used to evaluate both empirical and ab initio theoretical models. While gas-phase data are the most suitable for comparison with theoretical calculations, there are technical difficulties entailed in generating workable densities of gas-phase actinide molecules that have limited the range of species that have been characterized. Many of the compounds of interest are refractory, and problems associated with the use of high temperature vapors have complicated measurements of spectra, ionization energies, and reactions. One approach that has proved to be especially valuable in overcoming this difficulty has been the use of pulsed laser ablation to generate plumes of vapor from refractory actinide-containing materials. The vapor is entrained in an inert gas, which can be used to cool the actinide species to room …
- Cometabolic bioremediation
- Cometabolic bioremediation is probably the most under appreciated bioremediation strategy currently available. Cometabolism strategies stimulate only indigenous microbes with the ability to degrade the contaminant and cosubstrate e.g. methane, propane, toluene and others. This highly targeted stimulation insures that only those microbes that can degrade the contaminant are targeted, thus reducing amendment costs, well and formation plugging, etc. Cometabolic bioremediation has been used on some of the most recalcitrant contaminants, e.g. PCE, TCE, MTBE, TNT, dioxane, atrazine, etc. Methanotrophs have been demonstrated to produce methane monooxygense, an oxidase that can degrade over 300 compounds. Cometabolic bioremediation also has the advantage of being able to degrade contaminants to trace concentrations, since the biodegrader is not dependent on the contaminant for carbon or energy. Increasingly we are finding that in order to protect human health and the environment that we must remediate to lower and lower concentrations, especially for compounds like endocrine disrupters, thus cometabolism may be the best and maybe the only possibility that we have to bioremediate some contaminants.
- Cometabolic bioremediation
- This is a report on the comebiotic bioremediation which is the most under-appreciated strategy currently available.
- FCC Record, Volume 24, No. 4, Pages 2572 to 3518, February 27 - March 20, 2009
- Biweekly, comprehensive compilation of decisions, reports, public notices, and other documents of the U.S. Federal Communications Commission.
- Fluid effects on seismic waves in hard rocks with fractures and in soft granular media
- When fractures in otherwise hard rocks are filled with fluids (oil, gas, water, CO{sub 2}), the type and physical state of the fluid (liquid or gas) can make a large difference in the wave speeds and attenuation properties of seismic waves. The present work summarizes methods of deconstructing theses effects of fractures, together with any fluids contained within them, on wave propagation as observed in reflection seismic data. Additional studies of waves in fluid-saturated granular media show that the behavior can be quite different from that for fractured media, since these materials are typically much softer mechanically than are the fractured rocks (i.e., having a very small drained moduli). Important fluid effects in such media are often governed as much by fluid viscosity as by fluid bulk modulus.
- Mass Transport within Soils
- Contaminants in soil can impact human health and the environment through a complex web of interactions. Soils exist where the atmosphere, hydrosphere, geosphere, and biosphere converge. Soil is the thin outer zone of the earth's crust that supports rooted plants and is the product of climate and living organisms acting on rock. A true soil is a mixture of air, water, mineral, and organic components. The relative proportions of these components determine the value of the soil for agricultural and for other human uses. These proportions also determine, to a large extent, how a substance added to soil is transported and/or transformed within the soil (Spositio, 2004). In mass-balance models, soil compartments play a major role, functioning both as reservoirs and as the principal media for transport among air, vegetation, surface water, deeper soil, and ground water (Mackay, 2001). Quantifying the mass transport of chemicals within soil and between soil and atmosphere is important for understanding the role soil plays in controlling fate, transport, and exposure to multimedia pollutants. Soils are characteristically heterogeneous. A trench dug into soil typically reveals several horizontal layers having different colors and textures. As illustrated in Figure 1, these multiple layers are often divided into three major horizons: (1) the A horizon, which encompasses the root zone and contains a high concentration of organic matter; (2) the B horizon, which is unsaturated, lies below the roots of most plants, and contains a much lower organic carbon content; and (3) the C horizon, which is the unsaturated zone of weathered parent rock consisting of bedrock, alluvial material, glacial material, and/or soil of an earlier geological period. Below these three horizons lies the saturated zone - a zone that encompasses the area below ground surface in which all interconnected openings within the geologic media are completely filled …
- Exceptional groups, symmetric spaces and applications
- In this article we provide a detailed description of a technique to obtain a simple parameterization for different exceptional Lie groups, such as G{sub 2}, F{sub 4} and E{sub 6}, based on their fibration structure. For the compact case, we construct a realization which is a generalization of the Euler angles for SU(2), while for the non compact version of G{sub 2(2)}/SO(4) we compute the Iwasawa decomposition. This allows us to obtain not only an explicit expression for the Haar measure on the group manifold, but also for the cosets G{sub 2}/SO(4), G{sub 2}/SU(3), F{sub 4}/Spin(9), E{sub 6}/F{sub 4} and G{sub 2(2)}/SO(4) that we used to find the concrete realization of the general element of the group. Moreover, as a by-product, in the simplest case of G{sub 2}/SO(4), we have been able to compute an Einstein metric and the vielbein. The relevance of these results in physics is discussed.
- FCC Record, Volume 24, No. 5, Pages 3519 to 4422, March 23 - April 10, 2009
- Biweekly, comprehensive compilation of decisions, reports, public notices, and other documents of the U.S. Federal Communications Commission.
- OVERVIEW OF BERYLLIUM SAMPLING AND ANALYSIS
- Because of its unique properties as a lightweight metal with high tensile strength, beryllium is widely used in applications including cell phones, golf clubs, aerospace, and nuclear weapons. Beryllium is also encountered in industries such as aluminium manufacturing, and in environmental remediation projects. Workplace exposure to beryllium particulates is a growing concern, as exposure to minute quantities of anthropogenic forms of beryllium may lead to sensitization and to chronic beryllium disease, which can be fatal and for which no cure is currently known. Furthermore, there is no known exposure-response relationship with which to establish a 'safe' maximum level of beryllium exposure. As a result, the current trend is toward ever lower occupational exposure limits, which in turn make exposure assessment, both in terms of sampling and analysis, more challenging. The problems are exacerbated by difficulties in sample preparation for refractory forms of beryllium, such as beryllium oxide, and by indications that some beryllium forms may be more toxic than others. This chapter provides an overview of sources and uses of beryllium, health risks, and occupational exposure limits. It also provides a general overview of sampling, analysis, and data evaluation issues that will be explored in greater depth in the remaining chapters. The goal of this book is to provide a comprehensive resource to aid personnel in a wide variety of disciplines in selecting sampling and analysis methods that will facilitate informed decision-making in workplace and environmental settings.
- CHAPTER 7. BERYLLIUM ANALYSIS BY NON-PLASMA BASED METHODS
- The most common method of analysis for beryllium is inductively coupled plasma atomic emission spectrometry (ICP-AES). This method, along with inductively coupled plasma mass spectrometry (ICP-MS), is discussed in Chapter 6. However, other methods exist and have been used for different applications. These methods include spectroscopic, chromatographic, colorimetric, and electrochemical. This chapter provides an overview of beryllium analysis methods other than plasma spectrometry (inductively coupled plasma atomic emission spectrometry or mass spectrometry). The basic methods, detection limits and interferences are described. Specific applications from the literature are also presented.
- Unmanned Systems Integrated Roadmap: Fiscal Years 2009-2034
- Biennial report describing progress and changes in unmanned systems technology used by the military, with a 25-year strategic plan to describe goals for the continued development, production, testing, training, operation, and sustainment of the technologies. "This is the second edition of the integrated Office of the Secretary of Defense Unmanned Systems Roadmap (2009-2034) that includes Unmanned Aircraft systems, Unmanned Ground systems and Unmanned Maritime Systems. This Roadmap provides Defense-wide vision for unmanned systems and related technologies" (p. iii).
- MANHATTAN PROJECT B REACTOR HANFORD WASHINGTON [HANFORD'S HISTORIC B REACTOR (12-PAGE BOOKLET)]
- The Hanford Site began as part of the United States Manhattan Project to research, test and build atomic weapons during World War II. The original 670-square mile Hanford Site, then known as the Hanford Engineer Works, was the last of three top-secret sites constructed in order to produce enriched uranium and plutonium for the world's first nuclear weapons. B Reactor, located about 45 miles northwest of Richland, Washington, is the world's first full-scale nuclear reactor. Not only was B Reactor a first-of-a-kind engineering structure, it was built and fully functional in just 11 months. Eventually, the shoreline of the Columbia River in southeastern Washington State held nine nuclear reactors at the height of Hanford's nuclear defense production during the Cold War era. The B Reactor was shut down in 1968. During the 1980's, the U.S. Department of Energy began removing B Reactor's support facilities. The reactor building, the river pumphouse and the reactor stack are the only facilities that remain. Today, the U.S. Department of Energy (DOE) Richland Operations Office offers escorted public access to B Reactor along a designated tour route. The National Park Service (NPS) is studying preservation and interpretation options for sites associated with the Manhattan Project. A draft is expected in summer 2009. A final report will recommend whether the B Reactor, along with other Manhattan Project facilities, should be preserved, and if so, what roles the DOE, the NPS and community partners will play in preservation and public education. In August 2008, the DOE announced plans to open B Reactor for additional public tours. Potential hazards still exist within the building. However, the approved tour route is safe for visitors and workers. DOE may open additional areas once it can assure public safety by mitigating hazards.
- Experimental Mathematics and Computational Statistics
- The field of statistics has long been noted for techniques to detect patterns and regularities in numerical data. In this article we explore connections between statistics and the emerging field of 'experimental mathematics'. These includes both applications of experimental mathematics in statistics, as well as statistical methods applied to computational mathematics.
- FCC Record, Volume 24, No. 6, Pages 4423 to 5282, April 13 - May 1, 2009
- Biweekly, comprehensive compilation of decisions, reports, public notices, and other documents of the U.S. Federal Communications Commission.
- FCC Record, Volume 24, No. 7, Pages 5283 to 6184, May 4 - May 22, 2009
- Biweekly, comprehensive compilation of decisions, reports, public notices, and other documents of the U.S. Federal Communications Commission.
- Hadron Production in Heavy Ion Collisions
- Heavy ion collisions are an ideal tool to explore the QCD phase diagram. The goal is to study the equation of state (EOS) and to search for possible in-medium modifications of hadrons. By varying the collision energy a variety of regimes with their specific physics interest can be studied. At energies of a few GeV per nucleon, the regime where experiments were performed first at the Berkeley Bevalac and later at the Schwer-Ionen-Synchrotron (SIS) at GSI in Darmstadt, we study the equation of state of dense nuclear matter and try to identify in-medium modifications of hadrons. Towards higher energies, the regime of the Alternating Gradient Synchrotron (AGS) at the Brookhaven National Laboratory (BNL), the Super-Proton Synchrotron (SPS) at CERN, and the Relativistic Heavy Ion Collider (RHIC) at BNL, we expect to produce a new state of matter, the Quark-Gluon Plasma (QGP). The physics goal is to identify the QGP and to study its properties. By varying the energy, different forms of matter are produced. At low energies we study dense nuclear matter, similar to the type of matter neutron stars are made of. As the energy is increased the main constituents of the matter will change. Baryon excitations will become more prevalent (resonance matter). Eventually we produce deconfined partonic matter that is thought to be in the core of neutron stars and that existed in the early universe. At low energies a great variety of collective effects is observed and a rather good understanding of the particle production has been achieved, especially that of the most abundantly produced pions and kaons. Many observations can be interpreted as time-ordered emission of various particle species. It is possible to determine, albeit model dependent, the equation of state of nuclear matter. We also have seen indications, that the kaon mass, especially the mass …
- Benefits of Parallel I/O in Ab Initio Nuclear Physics Calculations, ICCS 2009 Proceedings
- Many modern scientific applications rely on highly parallel calculations, which scale to 10's of thousands processors. However, most applications do not concentrate on parallelizing input/output operations. In particular, sequential I/O has been identified as a bottleneck for the highly scalable MFDn (Many Fermion Dynamics for nuclear structure) code performing ab initio nuclear structure calculations. In this paper, we develop interfaces and parallel I/O procedures to use a well-known parallel I/O library in MFDn. As a result, we gain efficient input/output of large datasets along with their portability and ease of use in the downstream processing.
- Electronic Structure Calculations and Adaptation Scheme in Multi-core Computing Environments
- Multi-core processing environments have become the norm in the generic computing environment and are being considered for adding an extra dimension to the execution of any application. The T2 Niagara processor is a very unique environment where it consists of eight cores having a capability of running eight threads simultaneously in each of the cores. Applications like General Atomic and Molecular Electronic Structure (GAMESS), used for ab-initio molecular quantum chemistry calculations, can be good indicators of the performance of such machines and would be a guideline for both hardware designers and application programmers. In this paper we try to benchmark the GAMESS performance on a T2 Niagara processor for a couple of molecules. We also show the suitability of using a middleware based adaptation algorithm on GAMESS on such a multi-core environment.
- FCC Record, Volume 24, No. 9, Pages 7017 to 7967, May 26 - June 12, 2009
- Biweekly, comprehensive compilation of decisions, reports, public notices, and other documents of the U.S. Federal Communications Commission.
- FCC Record, Volume 24, No. 10, Pages 7968 to 8784, June 15 - June 26, 2009
- Biweekly, comprehensive compilation of decisions, reports, public notices, and other documents of the U.S. Federal Communications Commission.
- Hydrological consequences of global warming
- The 2007 Intergovernmental Panel for Climate Change indicates there is strong evidence that the atmospheric concentration of carbon dioxide far exceeds the natural range over the last 650,000 years, and this recent warming of the climate system is unequivocal, resulting in more frequent extreme precipitation events, earlier snowmelt runoff, increased winter flood likelihoods, increased and widespread melting of snow and ice, longer and more widespread droughts, and rising sea level. The effects of recent warming has been well documented and climate model projections indicate a range of hydrological impacts with likely to very likely probabilities (67 to 99 percent) of occurring with significant to severe consequences in response to a warmer lower atmosphere with an accelerating hydrologic cycle.
- Model Components of the Certification Framework for Geologic Carbon Sequestration Risk Assessment
- We have developed a framework for assessing the leakage risk of geologic carbon sequestration sites. This framework, known as the Certification Framework (CF), emphasizes wells and faults as the primary potential leakage conduits. Vulnerable resources are grouped into compartments, and impacts due to leakage are quantified by the leakage flux or concentrations that could potentially occur in compartments under various scenarios. The CF utilizes several model components to simulate leakage scenarios. One model component is a catalog of results of reservoir simulations that can be queried to estimate plume travel distances and times, rather than requiring CF users to run new reservoir simulations for each case. Other model components developed for the CF and described here include fault characterization using fault-population statistics; fault connection probability using fuzzy rules; well-flow modeling with a drift-flux model implemented in TOUGH2; and atmospheric dense-gas dispersion using a mesoscale weather prediction code.
- Chapter 27 -- Breast Cancer Genomics, Section VI, Pathology and Biological Markers of Invasive Breast Cancer
- Breast cancer is predominantly a disease of the genome with cancers arising and progressing through accumulation of aberrations that alter the genome - by changing DNA sequence, copy number, and structure in ways that that contribute to diverse aspects of cancer pathophysiology. Classic examples of genomic events that contribute to breast cancer pathophysiology include inherited mutations in BRCA1, BRCA2, TP53, and CHK2 that contribute to the initiation of breast cancer, amplification of ERBB2 (formerly HER2) and mutations of elements of the PI3-kinase pathway that activate aspects of epidermal growth factor receptor (EGFR) signaling and deletion of CDKN2A/B that contributes to cell cycle deregulation and genome instability. It is now apparent that accumulation of these aberrations is a time-dependent process that accelerates with age. Although American women living to an age of 85 have a 1 in 8 chance of developing breast cancer, the incidence of cancer in women younger than 30 years is uncommon. This is consistent with a multistep cancer progression model whereby mutation and selection drive the tumor's development, analogous to traditional Darwinian evolution. In the case of cancer, the driving events are changes in sequence, copy number, and structure of DNA and alterations in chromatin structure or other epigenetic marks. Our understanding of the genetic, genomic, and epigenomic events that influence the development and progression of breast cancer is increasing at a remarkable rate through application of powerful analysis tools that enable genome-wide analysis of DNA sequence and structure, copy number, allelic loss, and epigenomic modification. Application of these techniques to elucidation of the nature and timing of these events is enriching our understanding of mechanisms that increase breast cancer susceptibility, enable tumor initiation and progression to metastatic disease, and determine therapeutic response or resistance. These studies also reveal the molecular differences between cancer and normal that …
- FCC Record, Volume 24, No. 11, Pages 8785 to 9698, June 29 - July 30, 2009
- Biweekly, comprehensive compilation of decisions, reports, public notices, and other documents of the U.S. Federal Communications Commission.
- Thermal neutron imaging in an active interrogation environment
- Gain an in-depth understanding of the role of quark flavor.
- FCC Record, Volume 24, No. 12, Pages 9699 to 10566, July 31 - August 7, 2009
- Biweekly, comprehensive compilation of decisions, reports, public notices, and other documents of the U.S. Federal Communications Commission.
- FCC Record, Volume 24, No. 13, Pages 10567 to 11508, August 10 - August 31, 2009
- Biweekly, comprehensive compilation of decisions, reports, public notices, and other documents of the U.S. Federal Communications Commission.
- Monodisperse metal nanoparticle catalysts on silica mesoporous supports: synthesis, characterizations, and catalytic reactions
- The design of high performance catalyst achieving near 100% product selectivity at maximum activity is one of the most important goals in the modern catalytic science research. To this end, the preparation of model catalysts whose catalytic performances can be predicted in a systematic and rational manner is of significant importance, which thereby allows understanding of the molecular ingredients affecting the catalytic performances. We have designed novel 3-dimensional (3D) high surface area model catalysts by the integration of colloidal metal nanoparticles and mesoporous silica supports. Monodisperse colloidal metal NPs with controllable size and shape were synthesized using dendrimers, polymers, or surfactants as the surface stabilizers. The size of Pt, and Rh nanoparticles can be varied from sub 1 nm to 15 nm, while the shape of Pt can be controlled to cube, cuboctahedron, and octahedron. The 3D model catalysts were generated by the incorporation of metal nanoparticles into the pores of mesoporous silica supports via two methods: capillary inclusion (CI) and nanoparticle encapsulation (NE). The former method relies on the sonication-induced inclusion of metal nanoparticles into the pores of mesoporous silica, whereas the latter is performed by the encapsulation of metal nanoparticles during the hydrothermal synthesis of mesoporous silica. The 3D model catalysts were comprehensively characterized by a variety of physical and chemical methods. These catalysts were found to show structure sensitivity in hydrocarbon conversion reactions. The Pt NPs supported on mesoporous SBA-15 silica (Pt/SBA-15) displayed significant particle size sensitivity in ethane hydrogenolysis over the size range of 1-7 nm. The Pt/SBA-15 catalysts also exhibited particle size dependent product selectivity in cyclohexene hydrogenation, crotonaldehyde hydrogenation, and pyrrole hydrogenation. The Rh loaded SBA-15 silica catalyst showed structure sensitivity in CO oxidation reaction. In addition, Pt-mesoporous silica core-shell structured NPs (Pt{at}mSiO{sub 2}) were prepared, where the individual Pt NP is encapsulated by …