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Deepwater Horizon Oil Spill as a Case Study for Interdisciplinary Cooperation within Developmental Biology, Environmental Sciences and Physiology

Description: This article makes the argument for interdisciplinary teams that bring together scientists with different specialties as an efficient way--and perhaps the only way--to unravel highly complex biological effects of marine oil spills.
Date: December 17, 2015
Creator: Burggren, Warren W.; Dubansky, Benjamin; Roberts, Aaron & Alloy, Matthew

Transgenic approaches to altering carbon and nitrogen partitioning in whole plants: assessing the potential to improve crop yields and nutritional quality

Description: This article summarizes the key transport steps involved in organic carbon and nitrogen compound partitioning, and discusses various transgenic approaches for directly manipulating key carbon and nitrogen transporters involved.
Date: April 22, 2015
Creator: Yadav, Umesh P.; Ayre, Brian G. & Bush, Daniel R.

A deep transcriptomic analysis of pod development in the vanilla orchid (Vanilla planifolia)

Description: This research article describes very large gene sequence datasets from vanilla pods at different times of development, representing different tissue types, including the seeds, hairs, and placental and mesocarp tissues within the pod.
Date: November 7, 2014
Creator: Rao, Xiaolan; Krom, Nick; Tang, Yuhong; Widiez, Thomas; Havkin-Frenkel, Daphna; Belanger, Faith C. et al.

Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Description: This article demonstrates that whole genome sequencing is an efficient approach for identification of causative genes underlying symbiotic nitrogen fixation defective phenotypes in Medicago truncatula Tnt1 insertion mutants obtained via forward genetic screens.
Date: February 27, 2016
Creator: Veerappan, Vijaykumar; Jani, Mehul; Kadel, Khem; Troiani, Taylor; Gale, Ronny; Mayes, Tyler et al.

Applications of Fourier Transform Ion Cyclotron Resonance (FT-ICR) and Orbitrap Based High Resolution Mass Spectrometry in Metabolomics and Lipidomics

Description: This review explores the latest developments in Fourier transform mass spectrometry and Orbitrap based metabolomics technology, its advantages and drawbacks for using in metabolomics and lipidomics studies, and development of novel approaches for processing high resolution mass spectrometry data.
Date: May 25, 2016
Creator: Ghaste, Manoj; Mistrik, Robert & Shulaev, Vladimir

Computational inference of the structure and regulation of the lignin pathway in Panicum virgatum

Description: This article uses a systems biological modeling approach to address the challenge of in vivo measurements to elucidate the structure and regulation of the lignin pathway through a computational characterization of alternate candidate topologies.
Date: September 17, 2015
Creator: Faraji, Mojdeh; Fonseca, Luis L.; Escamilla-Treviño, Luis; Dixon, R. A. & Voit, Eberhard O.

Ion exchanger in the brain: Quantitative analysis of perineuronally fixed anionic binding sites suggests diffusion barriers with ion sorting properties

Description: This article proposes that fixed charge-densities in the brain are involved in regulating ion mobility, the volume fraction of extracellular space and the viscosity of matrix components.
Date: December 1, 2015
Creator: Morawski, Markus; Reinert, Tilo; Meyer-Klaucke, Wolfram; Wagner, Friedrich E.; Tröger, Wolfgang; Reinert, Anja et al.

Flexible Holographic Fabrication of 3D Photonic Crystal Templates with Polarization Control through a 3D Printed Reflective Optical Element

Description: This article systematically studies the holographic fabrication of three-dimensional (3D) structures using a single 3D printed reflective optical element (ROE), taking advantage of the ease of design and 3D printing of the ROE.
Date: July 21, 2016
Creator: Lowell, David; George, David; Lutkenhaus, Jeffrey; Tian, Chris; Adewole, Murthada; Zhang, Hualiang et al.

HSI2/VAL1 PHD-like domain promotes H3K27 trimethylation to repress the expression of seed maturation genes and complex transgenes in Arabidopsis seedlings

Description: This article studies the novel mutant allele hsi2-4, isolated in a genetic screen to identify Arabidopsis mutants with consitutively elevated expression of a glutathione S-transferase F8:luciferase reporter gene in Arabidopsis.
Date: November 1, 2014
Creator: Veerappan, Vijaykumar; Chen, Naichong; Reichert, Angelika & Allen, Randy D.