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open access

Interspecific Differences in Metabolic Rate and Metabolic Temperature Sensitivity Create Distinct Thermal Ecological Niches in Lizards (Plestiodon)

Description: This article examines three congeneric lizards from the southeastern United States (Plestiodon fasciatus, P. inexpectatus, and P. laticeps) and hypothesizes that interspecific differences in metabolic temperature sensitivity locally segregates them across their total range.
Date: October 19, 2016
Creator: Watson, Charles M. & Burggren, Warren W.
open access

Terrestrial herpetofauna of Limnos and Agios Efstratios (Northern Aegean, Greece), including new species records for Malpolon insignitus (Geoffroy Saint-Hilaire, 1827) and Pelobates syriacus Boettger, 1889

Description: This article presents herpetofaunal observations from Limnos and Agios Efstratios, two Asia Minor continental shelf islands in the Aegean Sea. Comprehensive surveys over 88 days in total on Limnos, over a period of nine years, consisted mainly of visual encounter surveys and road cruised observations, revealed the presence of three species of amphibians and twelve species of reptiles, including two new species records for the island (Malpolon insignitus and Pelobates syriacus). The results of t… more
Date: October 25, 2016
Creator: Strachinis, Ilias & Roussos, Stephanos Antonios
open access

Malonylation of Glucosylated N-Lauroylethanolamine: A New Pathway That Determines N-Acylethanolamine Metabolic Fate in Plants

Description: This article focuses on the gene At5g39050, which encodes a phenolic glucoside malonyltransferase 1 (PMAT1), to better understand the biological significance of N-lauroylethanolamine (NAE 12:0)-induced gene expression changes.
Date: November 17, 2016
Creator: Khan, Bibi Rafeiza; Wherritt, Daniel J.; Huhman, David; Sumner, Lloyd W.; Chapman, Kent D. & Blancaflor, Elison B.
open access

Applications of Fourier Transform Ion Cyclotron Resonance (FT-ICR) and Orbitrap Based High Resolution Mass Spectrometry in Metabolomics and Lipidomics

Description: This review explores the latest developments in Fourier transform mass spectrometry and Orbitrap based metabolomics technology, its advantages and drawbacks for using in metabolomics and lipidomics studies, and development of novel approaches for processing high resolution mass spectrometry data.
Date: May 25, 2016
Creator: Ghaste, Manoj; Mistrik, Robert & Shulaev, Vladimir
open access

EMOTION-III Model: A Theoretical Framework for Social Empathic Emotions in Autonomous Control Systems

Description: In this article, a theoretical model of social empathic emotion is derived based on the principles of survival by extending the maximization of self-gains to include others as an extended-self. This extended-self model of optimization for survival provides the computational mechanisms in the optimization process to maximize self-gains without minimizing the gains (or maximizing losses) for the other individuals. Thus, it can resolve conflicts in a competitive environment, and change the social … more
Date: July 29, 2016
Creator: Tam, Nicoladie D.
open access

Developmental plasticity of mitochondrial function in American alligators, Alligator mississippiensis

Description: This article investigates the effects of chronic developmental hypoxia on cardiac mitochondrial function in embryonic and juvenile American alligators (Alligator mississippiensis).
Date: October 1, 2016
Creator: Galli, Gina L. J.; Crossley, Janna; Elsey, Ruth M.; Dzialowski, Edward M. (Edward Michael); Shiels, Holly A. & Crossley, Dane A., II
open access

More comprehensive forensic genetic marker analyses for accurate human remains identification using massively parallel DNA sequencing

Description: This paper uses massively parallel sequencing (MPS) to characterize 140-year-old human skeletal remains discovered at a historical site in Deadwood, South Dakota, United States.
Date: October 17, 2016
Creator: Ambers, Angie D.; Churchill, Jennifer D.; King, Jonathan L.; Stoljarova, Monika; Gill-King, Harrell; Assidi, Mourad et al.
open access

Field-grown transgenic switchgras (Panicum virgatum L.) with altered lignin does not affect soil chemistry, microbiology, and carbon storage potential

Description: This article describes a study to evaluate effects of two independent lines of caffeic acid O-methyltransferase (COMT) downregulated switchgrass plants on soils in terms of chemistry, microbiolgy, and carbon cycling when grown in the field.
Date: September 22, 2016
Creator: DeBruyn, Jennifer M.; Bevard, David A.; Essington, Michael E.; McKnight, Julie Y.; Schaeffer, Sean M.; Baxter, Holly L. et al.
open access

The Differences between NAD-dependent malic enzyme and NADP-dependent malic enzyme Subtypes of C4 Photosynthesis: More than Decarboxylating Enzymes

Description: Article addresses the differences in evolutionary scenario, leaf anatomy, and especially C4 metabolic flow, C4 transporters, and cell-specific function deduced from recently reported cell-specific transcriptomic, proteomic, and metabolic analyses of NAD-dependent malic enzyme (NAD-ME) and NADP-dependent malic enzyme (NADP-ME) subtypes.
Date: October 13, 2016
Creator: Rao, Xiaolan & Dixon, R. A.
open access

Glucose or Altered Ceramide Biosynthesis Mediate Oxygen Deprivation Sensitivity Through Novel Pathways Revealed by Transcriptome Analysis in Caenorhabditis elegans

Description: This article discusses how RNA-sequencing analysis was performed to assess how a glucose-supplemented diet and/or a hyl-2 mutation altered the transcriptome.
Date: August 5, 2016
Creator: Ladage, Mary L.; King, Skylar D.; Burks, David J.; Quan, Daniel L.; Garcia, Anastacia M.; Azad, Rajeev K. et al.
open access

Identification of Novel Genomic Islands in Liverpool Epidemic Strain of Pseudomonas aeruginosa Using Segmentation and Clustering

Description: This article utilizes a recursive segmentation and cluster procedure presented as a genome-mining tool, GEMINI, to decipher genomic islands and understand their contributions to the evolution of virulence and antibiotic resistance in Pseudomonas aeruginosa.
Date: August 3, 2016
Creator: Jani, Mehul; Mathee, Kalal & Azad, Rajeev K.
open access

Accumulation of Flavonols over Hydroxycinnamic Acids Favors Oxidative Damage Protetion under Abiotic Stress

Description: This article reports on the characterization of the different antioxidant mechanisms of tomato plants subjected to heat stress, salinity stress, or a combination of both stresses.
Date: June 15, 2016
Creator: Martinez, Vicente; Mestre, Teresa C.; Rubio, Francisco; Girones-Vilaplana, Amadeo; Moreno, Diego; Mittler, Ron et al.
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