Automatic annotation of organellar genomes with DOGMA

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Description

Dual Organellar GenoMe Annotator (DOGMA) automates the annotation of extra-nuclear organellar (chloroplast and animal mitochondrial) genomes. It is a web-based package that allows the use of comparative BLAST searches to identify and annotate genes in a genome. DOGMA presents a list of putative genes to the user in a graphical format for viewing and editing. Annotations are stored on our password-protected server. Complete annotations can be extracted for direct submission to GenBank. Furthermore, intergenic regions of specified length can be extracted, as well the nucleotide sequences and amino acid sequences of the genes.

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Wyman, Stacia; Jansen, Robert K. & Boore, Jeffrey L. June 1, 2004.

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This article is part of the collection entitled: Office of Scientific & Technical Information Technical Reports and was provided by UNT Libraries Government Documents Department to Digital Library, a digital repository hosted by the UNT Libraries. It has been viewed 58 times , with 7 in the last month . More information about this article can be viewed below.

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Dual Organellar GenoMe Annotator (DOGMA) automates the annotation of extra-nuclear organellar (chloroplast and animal mitochondrial) genomes. It is a web-based package that allows the use of comparative BLAST searches to identify and annotate genes in a genome. DOGMA presents a list of putative genes to the user in a graphical format for viewing and editing. Annotations are stored on our password-protected server. Complete annotations can be extracted for direct submission to GenBank. Furthermore, intergenic regions of specified length can be extracted, as well the nucleotide sequences and amino acid sequences of the genes.

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OSTI as DE00836973

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  • Journal Name: Bioinformatics; Journal Volume: 20; Journal Issue: 17; Other Information: Submitted to Bioinformatics: Volume 20, No.17; Journal Publication Date: 11/22/2004

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  • Report No.: LBNL--55411
  • Grant Number: AC03-76SF00098
  • Office of Scientific & Technical Information Report Number: 836973
  • Archival Resource Key: ark:/67531/metadc788591

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Office of Scientific & Technical Information Technical Reports

Reports, articles and other documents harvested from the Office of Scientific and Technical Information.

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  • June 1, 2004

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  • Dec. 3, 2015, 9:30 a.m.

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  • April 4, 2016, 12:19 p.m.

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Wyman, Stacia; Jansen, Robert K. & Boore, Jeffrey L. Automatic annotation of organellar genomes with DOGMA, article, June 1, 2004; Berkeley, California. (digital.library.unt.edu/ark:/67531/metadc788591/: accessed December 15, 2017), University of North Texas Libraries, Digital Library, digital.library.unt.edu; crediting UNT Libraries Government Documents Department.