Comparative Plant Genomics Resources at Plant GDB Metadata

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Title

  • Main Title Comparative Plant Genomics Resources at Plant GDB

Creator

  • Author: Dong, Qunfeng
    Creator Type: Personal
    Creator Info: University of North Texas; Iowa State University
  • Author: Lawrence, Carolyn J.
    Creator Type: Personal
    Creator Info: Iowa State University
  • Author: Schlueter, Shannon D.
    Creator Type: Personal
    Creator Info: Iowa State University
  • Author: Wilkerson, Matthew D.
    Creator Type: Personal
    Creator Info: Iowa State University
  • Author: Kurtz, Stefan
    Creator Type: Personal
    Creator Info: Universität Hamburg
  • Author: Brendel, Volker
    Creator Type: Personal
    Creator Info: Iowa State University
  • Author: Lushbough, Carol
    Creator Type: Personal
    Creator Info: University of South Dakota

Publisher

  • Name: American Society of Plant Biologists
    Place of Publication: [Rockville, Maryland]

Date

  • Creation: 2005-10

Language

  • English

Description

  • Content Description: Article on comparative plant genomics resources at plant GDB.
  • Physical Description: 9 p.

Subject

  • Keyword: plant molecular sequences
  • Keyword: expressed sequence tags
  • Keyword: genes

Source

  • Journal: Plant Physiology, 2005, Rockville: American Society of Plant Biologists, pp. 610-618

Citation

  • Publication Title: Plant Physiology
  • Volume: 139
  • Issue: 2
  • Page Start: 610
  • Page End: 618
  • Peer Reviewed: True

Collection

  • Name: UNT Scholarly Works
    Code: UNTSW

Institution

  • Name: UNT College of Arts and Sciences
    Code: UNTCAS

Rights

  • Rights Access: public

Resource Type

  • Article

Format

  • Text

Identifier

  • DOI: 10.1104/pp.104.059212
  • Archival Resource Key: ark:/67531/metadc78294

Degree

  • Academic Department: Biological Sciences

Note

  • Display Note: Copyright ¬© 2005 American Society of Plant Biologists. The following article appeared in Plant Physiology, v. 139, pp. 610-618, www.plantphysiol.org/cgi/doi/10.1104/pp.104.059212
  • Display Note: Abstract: PlantGDB is a database of plant molecular sequences. Expressed sequence tag (EST) sequences are assembled into contigs that represent tentative unique genes. EST contigs are functionally annotated with information derived from known protein sequences that are highly similar to the putative translation products. Tentative Gene Ontology terms are assigned to match those of the similar sequences identified. Genome survey sequences are assembled similarly. The resulting genome survey sequence contigs are matched to ESTs and conserved protein homologs to identify putative full-length open reading frame-containing genes, which are subsequently provisionally classified according to established gene family designations. For Arabidopsis (Arabidopsis thaliana) and rice (Oryza sativa), the exon-intron boundaries for gene structures are annotated by spliced alignment of ESTs and full-length cDNAs to their respective complete genome sequences. Unique genome browsers have been developed to present all available EST and cDNA evidence for current transcript models. In addition, a number of bioinformatic tools have been integrated at PlantGDB that enable researchers to carry out sequence analyses on-site using both their own data and data residing within the database.