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open access

Comparative cell-specific transcriptomics reveals differentiation of C₄ photosynthesis pathways in switchgrass and other C₄ lineages

Description: This article provides an mesophyll and bundle sheath cell type-specific transcriptome data set from the monocot NAD-malic enzyme subtype switchgrass (Panicum virgatum).
Date: December 10, 2015
Creator: Rao, Xiaolan; Lu, Nan; Li, Guifen; Nakashima, Jin; Tang, Yuhong & Dixon, R. A.
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Partner: UNT College of Arts and Sciences
open access

Genomic and Co-expression Analyses Predict Multiple Genes Involved in Triterpene Saponin Biosynthesis in Medicago truncatula

Description: Article discusses genomic and coexpression analyses predicting multiple genes involved in triterpene saponin biosynthesis in Medicago truncatula.
Date: March 9, 2010
Creator: Naoumkina, Marina A.; Modolo, Luzia V.; Huhman, David; Urbanczyk-Wochniak, Ewa; Tang, Yuhong; Sumner, Lloyd W. et al.
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Partner: UNT College of Arts and Sciences
open access

A deep transcriptomic analysis of pod development in the vanilla orchid (Vanilla planifolia)

Description: This research article describes very large gene sequence datasets from vanilla pods at different times of development, representing different tissue types, including the seeds, hairs, and placental and mesocarp tissues within the pod.
Date: November 7, 2014
Creator: Rao, Xiaolan; Krom, Nick; Tang, Yuhong; Widiez, Thomas; Havkin-Frenkel, Daphna; Belanger, Faith C. et al.
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Partner: UNT College of Arts and Sciences
open access

Switchgrass (Panicum virgatum) possesses a divergent family of cinnamoyl CoA reductases with distinct biochemical properties

Description: Article on switchgrass (Panicum virgatum) possessing a divergent family of cinnamoyl CoA reductases with distinct biochemical properties.
Date: July 27, 2009
Creator: Escamilla-Treviño, Luis; Shen, Hui; Uppalapati, Srinivasa Rao; Ray, Tui; Tang, Yuhong; Hernandez, Timothy et al.
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Partner: UNT College of Arts and Sciences
open access

Functional analysis of members of the isoflavone and isoflavanone O-methyltransferase enzyme families from the model legume Medicago truncatula

Description: Article on a functional analysis of members of the isoflavone and isoflavanone O-methyltransferase enzyme families from the model legume Medicago truncatula.
Date: September 26, 2006
Creator: Deavours, Bettina E.; Liu, Chang-Jun; Naoumkina, Marina A.; Tang, Yuhong; Farag, Mohamed A.; Sumner, Lloyd W. et al.
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Partner: UNT College of Arts and Sciences
open access

Gene regulatory networks for lignin biosynthesis in switchgrass (Panicum virgatum)

Description: This article presents a combination of computational and experimental approaches to develop gene regulatory networks for lignin formation in switchgrass (Panicum virgatum), which has been selected as a biofuel crop in the United States.
Date: August 24, 2018
Creator: Rao, Xiaolan; Chen, Xin; Shen, Hui; Ma, Qin; Li, Guifen; Tang, Yuhong et al.
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Partner: UNT College of Science
open access

A WD40 Repeat Protein from Medicago truncatula Is Necessary for Tissue-Specific Anthocyanin and Proanthocyanidin Biosynthesis But Not for Trichome Development

Description: Article discussing how WD40 repeat protein from Medicago truncatula is necessary for tissue-specific anthocyanin and proanthocyanidin biosynthesis but not for trichome development.
Date: November 2009
Creator: Pang, Yongzhen; Wenger, Jonathan P.; Saathoff, Katie; Peel, Gregory J.; Wen, Jiangqi; Huhman, David et al.
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Partner: UNT College of Arts and Sciences
open access

Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis

Description: This article observes genetic and biochemical support for the importance of folylpolyglutamates in the lignocellulosic pathway and reinforces previous observations that targeting a single FPGS isoform for down-regulation leads to reduced lignin in plants.
Date: December 21, 2015
Creator: Srivastava, Avinash C.; Chen, Fang; Ray, Tui; Pattahil, Sivakumar; Peña, Maria J.; Avci, Utku et al.
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Partner: UNT College of Arts and Sciences
open access

Combining loss of function of FOLYLPOLYGLUTAMATE SYNTHETASE1 and CAFFEOYL-COA 3-O-METHYLTRANSFERASE1 for lignin reduction and improved saccharification efficiency in Arabidopsis thaliana

Description: This article tests if lignin content can be further reduced by combining genetic mutations in C1 metabolism and the lignin biosynthetic pathway by generating and functionally characterizing fpgs1ccoaomt1 double mutants. The observations demonstrate that additional reduction in lignin content and improved sugar release can be achieved by simultaneous downregulation of a gene in the C1 (FPGS1) and lignin biosynthetic (CCOAOMT) pathways.
Date: May 3, 2019
Creator: Xie, Hongli; Engle, Nancy L.; Venketachalam, Sivasankari; Yoo, Chang Geun; Barros, Jaime; Lecoultre, Mitch et al.
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Partner: UNT College of Science
open access

Combining loss of function of FOLYLPOLYGLUTAMATE SYNTHETASE1 and CAFFEOYL-COA 3-O-METHYLTRANSFERASE1 for lignin reduction and improved saccharification efficiency in Arabidopsis thaliana

Description: Article describes study in which fpgs1ccoaomt1 double mutants were generated and functionally characterized in order to test if lignin content can be further reduced by combining genetic mutations in C1 metabolism and the lignin biosynthetic pathway.
Date: May 3, 2019
Creator: Xie, Hongli; Engle, Nancy L.; Venketachalam, Sivasankari; Yoo, Chang Geun; Barros, Jaime; Lecoultre, Mitch et al.
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Partner: UNT College of Science
open access

Transgenic Switchgrass (Panicum Virgatum L.) Targeted for Reduced Recalcitrance to Bioconversion: A 2-Year Comparative Analysis of Field-Grown Lines Modified for Target Gene or Genetic Element Expression

Description: This article discusses the investigation of clones of plants representing independent transgenic events and their respective nontransgenic control lines for biomass yield, carbohydrate composition and recalcitrance to bioconversion via separate hydrolysis and fermentation to yield ethanol.
Date: February 20, 2017
Creator: Dumitrache, Alexandru; Natzke, Jace; Rodriguez, Miguel, Jr.; Yee, Kelsey L.; Thompson, Olivia A.; Poovaiah, Charleson R. et al.
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Partner: UNT College of Arts and Sciences
open access

Development and use of a switchgrass (Panicum virgatum L.) transformation pipeline by the BioEnergy Science Center to evaluate plants for reduced cell wall recalcitrance

Description: Article examines the creation of a transformation pipeline (TP) to produce plants with decreased recalcitrance and a laboratory information management system (LIMS) for data compilation from these plants. While many genes accepted into the TP resulted in transgenic switchgrass without modified lignin or biomass content, a group of genes with potential to improve lignocellulosic biofuel yields was identified. Results from transgenic lines targeting xyloglucan and lignin structure provide example… more
Date: December 22, 2017
Creator: Nelson, Richard S.; Stewart, C. Neal; Gou, Jiqing; Holladay, Susan; Gallego-Giraldo, Lina; Flanagan, Amy et al.
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Partner: UNT College of Science
open access

Development and Use of a Switchgrass (Panicum Virgatum L.) Transformation Pipeline by the Bioenergy Science Center to Evaluate Plants for Reduced Cell Wall Recalcitrance

Description: This article provides information on the organization and outcomes of the BioEnergy Science Center Transformation Pipeline, and supplies useful information when developing coordinated, large-scale, multi-institutional reverse genetic pipelines to improve crop traits.
Date: December 22, 2017
Creator: Nelson, Richard S.; Stewart, C. Neal, Jr.; Gou, Jiqing; Holladay, Susan; Gallego-Giraldo, Lina; Flanagan, Amy et al.
Item Type: Refine your search to only Article
Partner: UNT College of Science
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