Using WebGBrowse to Visualize Genome Annotation on GBrowse

Using WebGBrowse to Visualize Genome Annotation on GBrowse

Date: March 2010
Creator: Podicheti, Ram & Dong, Qunfeng
Description: Article discussing using WebGBrowse to visualize genome annotation on GBrowse.
Contributing Partner: UNT College of Arts and Sciences
RICHEST - a web server for richness estimation in biological data

RICHEST - a web server for richness estimation in biological data

Date: February 27, 2009
Creator: Durden, Chris & Dong, Qunfeng
Description: Article discussing a web server for richness estimation in biological data called RICHness ESTimator (RICHEST).
Contributing Partner: UNT College of Arts and Sciences
WebGBrowse 2.1 - A Web Server Supporting Multiple Versions of the Generic Genome Browser for Customizable Genome Annotation Display

WebGBrowse 2.1 - A Web Server Supporting Multiple Versions of the Generic Genome Browser for Customizable Genome Annotation Display

Date: April 2011
Creator: Podicheti, Ram; Revanna, Kashi V. & Dong, Qunfeng
Description: In this book, the authors discuss WebGBrowse 2.1, one of the most popular genome browsers used by the research community.
Contributing Partner: UNT College of Arts and Sciences
Tracembler - software for in-silico chromosome walking in unassembled genomes

Tracembler - software for in-silico chromosome walking in unassembled genomes

Date: May 2007
Creator: Dong, Qunfeng; Wilkerson, Matthew D. & Brendel, Volker
Description: Article discussing Tracembler, a software for in-silico chromosome walking in unassembled genomes.
Contributing Partner: UNT College of Arts and Sciences
Enabling Large Scale Scientific Computations for Expressed Sequence Tag Sequencing over Grid and Cloud Computing Clusters

Enabling Large Scale Scientific Computations for Expressed Sequence Tag Sequencing over Grid and Cloud Computing Clusters

Date: September 2009
Creator: Pallickara, Sangmi Lee; Pierce, Marlon; Dong, Qunfeng & Kong, ChinHua
Description: This paper discusses expressed sequence tag sequencing over grid and cloud computing clusters, specifically for biological applications. In this paper, the authors propose a Web service framework for high-level job scheduling that is developed for scientific applications.
Contributing Partner: UNT College of Arts and Sciences
xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features

xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features

Date: November 20, 2006
Creator: Schlueter, Shannon D.; Wilkerson, Matthew D.; Dong, Qunfeng & Brendel, Volker
Description: Article discussing the eXtensible Genome Data Broker (xGDB) and an open-source computational infrastructure for the integrated evaluation and anlysis of genome features.
Contributing Partner: UNT College of Arts and Sciences
GSV: a web-based genome synteny viewer for customized data

GSV: a web-based genome synteny viewer for customized data

Date: 2011
Creator: Revanna, Kashi V.; Chiu, Chi-Chen; Bierschank, Ezekiel & Dong, Qunfeng
Description: Article discussing the genome synteny viewer (GSV), a web-based viewer providing a unique option for biologists to analyze genome synteny by uploading their own data set to a web-based comparative genome browser.
Contributing Partner: UNT College of Arts and Sciences
TableMaker: An ad hoc Query Tool for Relational Databases

TableMaker: An ad hoc Query Tool for Relational Databases

Date: July 2008
Creator: Lushbough, Carol; Duvick, Jon; Dong, Qunfeng; Jennewein, Douglas; Reynoldson, Joe & Brendel, Volker
Description: This paper discusses an ad hoc query tool for relational databases. Most Web servers hosting biological data limit users to a defined set of search options and output formats that are short of the whole range of options available to users with direct database access. However, to make full use of the wealth of data in the database resource, it is desirable to have an intermediate solution that provides a broad range of flexible query and output options through a Web portal.
Contributing Partner: UNT College of Arts and Sciences
A web-based multi-genome synteny viewer for customized data

A web-based multi-genome synteny viewer for customized data

Date: August 2, 2012
Creator: Revanna, Kashi V.; Munro, Daniel; Gao, Alvin; Chiu, Chi-Chen; Pathak, Anil & Dong, Qunfeng
Description: This article discusses a web-based multi-genome synteny viewer for customized data.
Contributing Partner: UNT College of Arts and Sciences
Draft Genome Sequence of the Cyanide-Utilizing Bacterium Pseudomonas fluorescens Strain NCIMB 11764

Draft Genome Sequence of the Cyanide-Utilizing Bacterium Pseudomonas fluorescens Strain NCIMB 11764

Date: 2012
Creator: Vilo, Claudia A.; Benedik, Michael J.; Kunz, Daniel A. & Dong, Qunfeng
Description: Article discussing the draft genome sequence of the cyanide-utilizing bacterium 'Pseudomonas fluorescens' strain NCIMB 11764.
Contributing Partner: UNT College of Arts and Sciences
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