Fish of the Abyss: Adaptation to Protein Structure in Response to High Hydrostatic Pressure

Fish of the Abyss: Adaptation to Protein Structure in Response to High Hydrostatic Pressure

Date: April 14, 2011
Creator: Wattron, Bailey & Dickstein, Rebecca
Description: This poster discusses research on the fish of the abyss. Many species of fish thrive in hydrostatic pressures high enough to kill human beings. Experiments conducted by Takami Morita reveal that certain types of muscle protein, which exists in most vertebrates, have a distinctively altered structure in abyssal fish of the genus 'Coryphaenoides.' The altered structure of these proteins aids significantly in the functioning of these proteins under high pressure. It is hypothesized that abyssal fish in general have adapted to the advanced hydrostatic pressures of the abyssal zone through similar protein alteration.
Contributing Partner: UNT Honors College
Control of Root Architecture and Nodulation by the LATD/NIP Transporter

Control of Root Architecture and Nodulation by the LATD/NIP Transporter

Date: November 2010
Creator: Harris, Jeanne M. & Dickstein, Rebecca
Description: This article discusses root architecture and nodulation. Abstract: The Medicago truncatula LATD/NIP gene is essential for the development of lateral and primary root and nitrogen-fixing nodule meristems as well as for rhizobial invasion of nodules. LATD/NIP encodes a member of the NRT1(PTR1) nitrate and di-and tri-peptide transporter family, suggesting that its function is to transport one of these or another compound(s). Because latd/nip mutants can have their lateral and primary root defects rescued by ABA, ABA is a potential substrate for transport. LATD/NIP expression in the root meristem was demonstrated to be regulated by auxin, cytokinin and abscisic acid, but not by nitrate. LATD/NIP's potential function and its role in coordinating root architecture and nodule formation are discussed.
Contributing Partner: UNT College of Arts and Sciences
The AGC Kinase MtIRE: A Link to Phospholipid Signaling During Nodulation?

The AGC Kinase MtIRE: A Link to Phospholipid Signaling During Nodulation?

Date: 2007
Creator: Pislariu, Catalina I. & Dickstein, Rebecca
Description: This article discusses the AGC Kinase gene MtIRE. Abstract: The development of nitrogen fixing root nodules is complex and involves an interplay of signaling processes. During maturation of plant host cells and their endocytosed rhizobia in symbiosomes, host cells and symbiosomes expand. This expansion is accompanied by a large quantity of membrane biogenesis. The authors recently characterized an AGC kinase gene, MtIRE, that could play a role in this expansion. MtIRE's expression coincides with host cell and symbiosome expansion in the proximal side of the invasion zone in developing Medicago truncatula nodules. MtIRE's closest homolog is the Arabidopsis AGC kinase family IRE gene, which regulates root hair elongation. AGC kinases are regulated by phospholipid signaling in animals and fungi as well as in the several instances where they have been studied in plants. Here we suggest that a phospholipid signaling pathway may also activate MtIRE activity and propose possible upstream activators of MtIRE protein's presumed AGC kinase activity.
Contributing Partner: UNT College of Arts and Sciences
Searching for the Genes that Encode Nodulation Symbiosis Between Medicago Truncatula and Rhizobia

Searching for the Genes that Encode Nodulation Symbiosis Between Medicago Truncatula and Rhizobia

Date: April 2, 2009
Creator: Casady, Richard William & Dickstein, Rebecca
Description: This presentation discusses research on searching for the genes that encode nodulation symbiosis between medicago truncatula and rhizobia. Rhizobia are a group of bacteria that interact with legumes to produce ammonia. They receive glucose and fix nitrogen for the plant so the plant is able to create the amino acids and Nucleic acids required for growth. This presentation explains the research and the physical mapping, cross over events in propogation, and genetic mapping
Contributing Partner: UNT Honors College
An IRE-Like AGC Kinase Gene, MtIRE, Has Unique Expression in the Invasion Zone of Developing Root Nodules in Medicago truncatula

An IRE-Like AGC Kinase Gene, MtIRE, Has Unique Expression in the Invasion Zone of Developing Root Nodules in Medicago truncatula

Date: June 2007
Creator: Pislariu, Catalina I. & Dickstein, Rebecca
Description: This article discusses AGC kinase genes. Abstract: The AGC protein kinase family (cAMP-dependent protein kinases A, cGMP-dependent protein kinases G, and phospholipid-dependent protein kinases C) have important roles regulating growth and development in animals and fungi. They are activated via lipid second messengers by 3-phosphoinositide-dependent protein kinase coupling lipid signals to phosphorylation of the AGC kinases. These phosphorylate downstream signal transduction protein targets. AGC kiinases are becoming better studied in plants, especially in Arabidopsis (Arabidopsis thaliana), where specific AGC kinases have been shown to have key roles in regulating growth signal pathways. The authors report here the isolation and characterization of the first AGC kinase gene identified in Medicago truncatula, MtIRE. It was cloned by homology with the Arabidopsis INCOMPLETE ROOT HAIR ELONGATION (IRE) gene. Semiquantitative reverse transcription-polymerase chain reaction analysis shows that, unlike its Arabidopsis counterpart, MtIRE is not expressed in uninoculated roots, but is expressed in root systems that have been inoculated with Sinorhizobium meliloti and are developing root nodules. MtIRE expression is also found in flowers. Expression analysis of a time course of nodule development and of nodulating root systems of many Medicago nodulation mutants shows MtIRE expression correlates with infected cell maturation during nodule development. During ...
Contributing Partner: UNT College of Arts and Sciences
Multiple domains in MtENOD8 protein including the signal peptide target it to the symbiosome

Multiple domains in MtENOD8 protein including the signal peptide target it to the symbiosome

Date: May 2012
Creator: Meckfessel, Matthew H.; Blancaflor, Elison B.; Plunkett, Michael; Dong, Qunfeng & Dickstein, Rebecca
Description: This article discusses multiple domains in MtENOD8 protein. Symbiotic nitrogen fixation occurs in nodules, specialized organs on the roots of legumes. Within nodules, host plant cells are infected with rhizobia that are encapsulated by a plant-derived membrane forming a novel organelle, the symbiosome. In Medicago truncatula, the symbiosome consists of the symbiosome membrane (SymM), a single rhizobium, and the soluble space between them, called the symbiosome space (Syms). The SymS is enriched with plant-derived proteins, including the MtENOD8 protein. Here, the authors present evidence from GFP fusion experiments that the MtENOD8 protein contains at least three symbiosome targeting domains, including its N-terminal signal peptide (SP). When ectopically expressed in non-nodulated root tissue, the MtENOD8 SP delivers GFP to the vacuole. During the course of nodulation, there is a nodule-specific re-direction MtENOD8-SP-GFP from the vacuole to punctate intermediates and subsequently to symbiosomes, with re-direction of MtENOD8-SP-GFP from the vacuole to punctate intermediates preceding intracellular rhizobial infection. Experiments with Medicago mutants having defects in rhizobial infection and symbiosome development demonstrated that the MtNIP/LATD gene is required for re-direction of the MtENOD8-SP-GFP from the vacuoles to punctate intermediates in nodules. The authors' evidence shows that MtENOD8 has evolved redundant targeting sequences for symbiosome ...
Contributing Partner: UNT College of Arts and Sciences
Rapid Analysis of Legume Root Nodule Development Using Confocal Microscopy

Rapid Analysis of Legume Root Nodule Development Using Confocal Microscopy

Date: 2004
Creator: Haynes, Janine G.; Czymmek, Kirk J.; Carlson, Carol A.; Veereshlingam, Harita; Dickstein, Rebecca & Sherrier, D. Janine
Description: This article discusses the rapid analysis of legume root nodule development using confocal microscopy. A rapid method for detailed analysis of nodule formation has been developed. Inoculated root tissues were stained with SYTO 13, a cell-permeant fluorescent nucleic acid-binding dye, and visualized using confocal laser scanning microscopy (CLSM). Structures with high concentrations of DNA and RNA, such as plant cell nuclei and bacteria, labeled strongly. The autofluorescent properties of cell walls made it possible to use CLSM to visualize both plant and rhizobial structures and generate a three-dimensional reconstruction of the root and invading bacteria. This method allowed clear observation of stages and structures important in nodule formation, such as rhizobial attachment to root hairs, hair deformation, infection thread ramification, nodule primordium development and nodule cell invasion. Bacteroid structures were easily were easily assessed without the need for fixation that might alter cellular integrity. Plant nodulation mutants with phenotypic differences in thread growth, cellular invasion and plant defense response were also documented. Multiple samples can be assessed using detailed microscopy without the need for extensive preparative work, labor-intensive analysis, or the generation of genetically modified samples.
Contributing Partner: UNT College of Arts and Sciences
Functional Assessment of the Medicago truncatula NIP/LATD Protein Demonstrates That It Is a High-Affinity Nitrate Transporter

Functional Assessment of the Medicago truncatula NIP/LATD Protein Demonstrates That It Is a High-Affinity Nitrate Transporter

Date: October 2012
Creator: Bagchi, Rammyani; Salehin, Mohammad; Adeyemo, O. Sarah; Salazar, Carolina; Shulaev, Vladimir; Sherrier, D. Janine et al
Description: This article discusses a functional assessment of the Medicago truncatula NIP/LATD. Abstract: The Medicago truncatula NIP/LATD (for Numerous Infections and Polyphenolics/Lateral root-organ Defective) gene encodes a protein found in a clade of nitrate transporters within the large NRT1(PTR) family that also encodes transporters of dipeptides and tripeptides, dicarboxylates, auxin, and abscisic acid. Of the NRT1(PTR) members known to transport nitrate, most are low-affinity transporters. Here, the authors show that M. truncatula nip/latd mutants are more defective in their lateral root responses to nitrate provided at low (250 μм) concentrations than at higher (5mм) concentrations; however, nitrate uptake experiments showed no discernible differences in uptake in the mutants. Heterologous expression experiments showed that MtNIP/LATD encodes a nitrate transporter: expression in Xenopus laevis oocytes conferred upon the oocytes the ability to take up nitrate from the medium, but oocytes expressing the less severe Mtnip-3 allele were proficient in nitrate transport. M. truncatula nip/latd mutants have pleiotropic defects in nodulation and root architecture defects but not for nodulation defects. This suggests that the spectrum of activities inherent in AtNRT1.1 is different from that possessed by MtNIP/LATD, but it could also reflect stability differences of each protein in M. truncatula. Collectively, the data show ...
Contributing Partner: UNT College of Arts and Sciences
LIN, a Medicago truncatula Gene Required for Nodule Differentiation and Persistence of Rhizobial Infections

LIN, a Medicago truncatula Gene Required for Nodule Differentiation and Persistence of Rhizobial Infections

Date: November 2004
Creator: Kuppusamy, Kavitha T.; Endre, Gabriella; Prabhu, Radhika; Penmetsa, R. Varma; Veereshlingam, Harita; Cook, Douglas R. et al
Description: This article discusses LIN, a Medicago truncatula gene. Abstract: Ethyl methanesulfonate mutagenesis of the model legume Medicago truncatula has previously identified several genes required for early steps in nodulation. Here, the authors describe a new mutant that is defective in intermediate steps of nodule differentiation. The lin (lumpy infections) mutant is characterized by a 4-fold reduction in the number of infections, all of which arrest in the root epidermis, and by nodule primordia that initiate normally but fail to mature. Genetic analyses indicate that the symbiotic phenotype is conferred by a single gene that maps to the lower arm of linkage group 1. Transcriptional markers for early Nod factor responses (RIP1 and ENOD40) are induced in lin, as is another early nodulin, ENOD20, a gene expressed during the differentiation of nodule primordia. By contrast, other markers correlated with primordium differentiation (CCS52A), infection progression (MtN6), or nodule morphogenesis (ENOD2 and ENOD8) show reduced or no induction in homozygous lin individuals. Taken together, these results suggest that LIN functions in maintenance of rhizobial infections and differentiation of nodules from nodule primordia.
Contributing Partner: UNT College of Arts and Sciences
A Putative Transporter is Essential for Integrating Nutrient and Hormone Signaling with Lateral Root Growth and Nodule Development in Medicago truncatula

A Putative Transporter is Essential for Integrating Nutrient and Hormone Signaling with Lateral Root Growth and Nodule Development in Medicago truncatula

Date: 2010
Creator: Yendrek, Craig R.; Lee, Yi-Ching; Morris, Viktoriya; Liang, Yan; Pislariu, Catalina I.; Burkart, Graham et al
Description: This article discusses a putative transporter for integrating nutrient and hormone signaling with lateral root growth and nodule development in Medicago truncatula. Legume root architecture involves not only elaboration of the root system by the formation of lateral roots but also the formation of symbiotic root nodules in association with nitrogen-fixing soil rhizobia. The Medicago truncatula LATD/NIP gene plays an essential role in the development of both primary and lateral roots as well as nodule development. We have cloned the LATD/NIP gene and show that it encodes a member of the NRT1(PTR) transporter family. LATD/NIP is expressed throughout the plant. pLATD/NIP-GFP promoter-reporter fusions in transgenic roots establish the spatial expression of LATD/NIP in primary root, lateral root and nodule meristems and the surrounding cells. Expression of LATD/NIP is regulated by hormones, in particular by abscisic acid which has been previously shown to rescue the primary and lateral root meristem arrest of latd mutants. latd mutants respond normally to ammonium but have defects in responses of the root architecture to nitrate. Taken together, these results suggest that LATD/NIP may encode a nitrate transporter or transporter of another compound.
Contributing Partner: UNT College of Arts and Sciences