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open access

Collaborative Research: Framework Implementations: CSSI: CANDY: Cyberinfrastructure for Accelerating Innovation in Network Dynamics

Description: Data management for the grant, "Collaborative Research: Framework Implementations: CSSI: CANDY: Cyberinfrastructure for Accelerating Innovation in Network Dynamics." Research addressing the lack of a comprehensive cyberinfrastructure that supports innovative research challenges in large-scale, complex, dynamic networks by developing a novel platform, called CANDY (Cyberinfrastructure for Accelerating Innovation in Network Dynamics), based on efficient, scalable parallel algorithm design for dyn… more
Date: 2021-09-01/2025-08-31
Creator: Bhowmick, Sanjukta
open access

Collaborative Research: SaTC: CORE: Small: Privacy protection of Vehicles location in Spatial Crowdsourcing under realistic adversarial models

Description: Data management plan for the grant, "Collaborative Research: SaTC: CORE: Small: Privacy protection of Vehicles location in Spatial Crowdsourcing under realistic adversarial models." Research to develop new location privacy protection techniques by considering vehicles’ mobility features in the road network, and consequently lead to a more secure and trustworthy computing environment in location-based services (LBSs). As privacy concerns are still among the main obstacles for mobile users to par… more
Date: 2021-07-01/2023-12-31
Creator: Qiu, Chenxi
open access

Collaborative Research: SHF: Small: LEGAS: Learning Evolving Graphs At Scale

Description: Data management plan for the grant, "Collaborative Research: SHF: Small: LEGAS: Learning Evolving Graphs At Scale." This project aims to improve the computation efficiency of graph neural networks (GNNs), which are an emerging class of deep learning models on graphs, with many successful applications, such as, recommendation systems, drug discovery, social network analysis, and code vulnerability detection. This project aims to to design an efficient GNN framework via algorithm and system co-de… more
Date: 2024-01-01/2026-12-31
Creator: Ji, Yuede
open access

Computing microRNA-gene interaction networks in pan-cancer using miRDriver

Description: This article is a study where the authors integrated the multi-omics datasets such as copy number aberration, DNA methylation, gene and microRNA expression to identify the signature microRNA-gene associations from frequently aberrated DNA regions across pan-cancer utilizing a LASSO-based regression approach.
Date: March 8, 2022
Creator: Bose, Banabithi; Moravec, Matthew & Bozdag, Serdar
open access

A Corpus of Metaphor Novelty Scores for Syntactically-Related Word Pairs

Description: Article introduces a large corpus of metaphor novelty scores for syntactically related word pairs, and releases it freely to the research community. This article describes the corpus, includes an analysis of its score distribution and the types of word pairs included in the corpus, and provides a brief overview of standard metaphor detection corpora.
Date: May 2018
Creator: Parde, Natalie & Nielsen, Rodney D.
open access

COS: A new MeSH term embedding incorporating corpus, ontology, and semantic predications

Description: Article studying the problem of incorporating corpus, ontology, and semantic predications to learn the embeddings of MeSH terms. The authors propose a novel framework, Corpus, Ontology, and Semantic predications-based MeSH term embedding (COS), to generate high-quality MeSH term embeddings.
Date: May 4, 2021
Creator: Ding, Juncheng & Jin, Wei
open access

Crinet: A computational tool to infer genome-wide competing endogenous RNA (ceRNA) interactions

Description: This article develops a computational tool named Crinet to infer genome-wide ceRNA networks addressing critical drawbacks. Crinet-inferred ceRNA groups that were consistently involved in the immune system related processes could be important assets in the light of the studies confirming the relation between immunotherapy and cancer. The source code of Crinet is in R and available at https://github.com/bozdaglab/crinet.
Date: May 13, 2021
Creator: Kesimoglu, Ziynet Nesibe & Bozdag, Serdar
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