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Characterization of sub-nuclear changes in Caenorhabditis elegans embryos exposed to brief, intermediate and long-term anoxia to analyze anoxia-induced cell cycle arrest
Date: December 20, 2005
Creator: Hajeri, Vinita A.; Trejo, Jesus & Padilla, Pamela
Description: This article discusses the characterization of sub-nuclear changes in Caenorhabditis elegans embryos exposed to brief, intermediate and long-term anoxia to analyze anoxia-induced cell cycle arrest. Abstract: Background: The soil nematode C. elegans survives oxygen-deprived conditions (anoxia; <.001 kPa O₂) by entering into a state of suspended animation in which cell cycle progression reversibly arrests. The majority of blastomeres of embryos exposed to anoxia arrest at interphase, prophase and metaphase. The spindle checkpoint proteins SAN-1 and MDF-2 are required for embryos to survive 24 hours of anoxia. To further investigate the mechanism of cell-cycle arrest, the authors examined and compared sub-nuclear changes such as chromatin localization pattern, post-translational modification of histone H3, spindle microtubules, and localization of the spindle checkpoint protein SAN-1 with respect to various anoxia exposure time points. To ensure analysis of embryos exposed to anoxia and not post-anoxic recovery the authors fixed all embryos in an anoxia glove box chamber. Results: Embryos exposed to brief periods to anoxia (30 minutes) contain prophase blastomeres with chromosomes in close proximity to the nuclear membrane, condensation of interphase chromatin and metaphase blastomeres with reduced spindle microtubules density. Embryos exposed to longer periods of anoxia (1-3 days) display several characteristics including interphase ...
Contributing Partner: UNT College of Arts and Sciences
Permallink:digital.library.unt.edu/ark:/67531/metadc122142/
The correlation-consistent composite approach: Application to the G3/99 test set
Date: September 13, 2006
Creator: DeYonker, Nathan J.; Grimes, Thomas V.; Yockel, Scott; Dinescu, Adriana; Mintz, Benjamin; Cundari, Thomas R., 1964- et al
Description: This article discusses the correlation-consistent composite approach. Abstract: The correlation-consistent composite approach (ccCA), an ab initio composite technique for computing atomic and molecular energies, recently has been shown to successfully reproduce experimental data for a number of systems. The ccCA is applied to the G3/99 test set, which includes 223 enthalpies of formation, 88 adiabatic ionization potentials, 58 adiabatic electron affinities, and 8 adiabatic proton affinities. Improvements on the original ccCA formalism include replacing the small basis set quadratic configuration interaction computation with a coupled cluster computation, employing a correction for scalar relativistic effects, utilizing the tight-d forms of the second-row correlation-consistent basis set extrapolation of MP2 energies, ccCA results in an almost zero mean deviation for the G3/99 set (with a best value of -0.10 kcal molˉ¹), and a 0.96 kcal molˉ¹ mean absolute deviation, which is equivalent to the accuracy of the G3X model chemistry. There are no optimized or empirical parameters included in the computation of ccCA energies. Except for a few systems to be discussed, ccCA performs as well as or better than Gn methods for most systems containing first-row atoms, while for systems containing second-row atoms, ccCA is an improvement over Gn model chemistries.
Contributing Partner: UNT College of Arts and Sciences
Permallink:digital.library.unt.edu/ark:/67531/metadc75420/
Construyendo una Red Chilena para Estudios Socioecológicos a Largo Plazo: Avances, enfoques y relevancia
Date: 2010
Creator: Anderson, Christopher B.; Rozzi, Ricardo, 1960-; Armesto, Juan J., 1953- & Gutiérrez, Julio R., 1953-
Description: This article discusses building a Chilean network for long-term socio-ecological research. Abstract: Since their formal inception in 1980, long-term ecological research (LTER) programs have served as a successful organizing framework to create research agendas and funding mechanisms that allow scientists to address meaningful ecological phenomena at the scales they occur. In its 30 years of existence, LTER has expanded its geographic range (currently the International LTER network has more than 40 country members with sites on every continent) and disciplinary foci (principally encompassing the natural and social sciences and leading some to call for a name change to long-term socio-ecological research efforts exist in both Chile and Argentina, and in 2008, the Institute of Ecology and Biodiversity launched Chile's first concerted effort to link three existing sites (Fray Jorge Forest National Park -33° S, Senda Darwin Biological Station - 43° S, and Omora Ethnobotanical Park - 55° S). Here, the authors present a special feature of the Revista Chilena de Historia Natural, dedicated to LTSER, with the aim of 1) providing a synthesis of some of the most emblematic cases of long-term socio-ecological research in Chile; 2) demonstrating the value of these efforts for the integration of research, education and ...
Contributing Partner: UNT College of Arts and Sciences
Permallink:digital.library.unt.edu/ark:/67531/metadc97936/
Computational s-Block Thermochemistry with the Correlation Consistent Composite Approach
Date: October 3, 2007
Creator: DeYonker, Nathan J.; Ho, Dustin S.; Wilson, Angela K. & Cundari, Thomas R., 1964-
Description: This article discusses computational s-block thermochemistry with the correlation consistent composite approach. Abstract: The correlation consistent composite approach (ccCA) is a model chemistry that has been shown to accurately compute gas-phase enthalpies of formation for alkali and alkaline earth metal oxides and hydroxides (Ho, D.S.; DeYonker, N.J.; Wilson, A.K.; Cundari, T.R., J. Phys. Chem. A 2006, 110, 9767). The ccCA results contrast to more widely used model chemistries where calculated enthalpies of formation for such species can be in error by up to 90 kcal molˉ¹. In this study, the authors have applied ccCA to a more general set of 42 s-block molecules and compared the ccCA ∆Hf values to values obtained using the G3 and G3B model chemistries. Included in this training set are water complexes such as Na(H₂O)n⁺ where n = 1 - 4, dimers and trimers of ionic compounds such as (LiCl)₂ and (LiCl)₃, and the largest ccCA computation to date: Be-(acac)₂, BeC₁₀H₁₄O₄. Problems with the G3 model chemistries seem to be isolated to metal-oxygen bonded systems and Be-containing systems, as G3 and G3B still perform quite well with a 2.7 and 2.6 kcal mol⁻¹ mean absolute deviation (MAD), respectively, for gas-phase enthalpies of formation. The MAD ...
Contributing Partner: UNT College of Arts and Sciences
Permallink:digital.library.unt.edu/ark:/67531/metadc77174/
Computational Study of Polarizabilities and Second Hyperpolarizabilities of Inorganic Transition Metal Thiometalates and Metalates in Solution
Date: March 8, 2000
Creator: Cundari, Thomas R., 1964-; Kurtz, Henry A. & Zhou, Tie
Description: This article discusses a computational study of polarizabilities and second hyperpolarizabilities of inorganic transition metal thiometalates and metalates in solution. Abstract: A systematic study of nonlinear optical (NLO) properties of inorganic transition metal (TM) thiometalates and metalates is reported. Polarizabilities (α) and second hyperpolarizabilities (y) are calculated in solution within the polarizable continuum model. It is found that NLO properties of anionic inorganic complexes can be successfully modeled in solution, when this cannot be done so in the gas phase. Solvent effects are found to significantly increase α and y. The effects are stronger on y (up to 80%) than on α (up to 40%) and stronger on TM thiometalates than on metalates. For α, solvent effects are found to be more important than electron correlation effects. For y, the two effects are similarly important. Solvent effects on α and y caused by subordinate factors other than the dominant electrostatic solute-solvent interactions were studied and assessed to be negligible. Upon solvation, large TM and ligand modification effects on α and y are found. One oxo-to-sulfido substitution results in an increase in α by 38 au and y by 10 000 au.
Contributing Partner: UNT College of Arts and Sciences
Permallink:digital.library.unt.edu/ark:/67531/metadc107806/
Comparative Plant Genomics Resources at Plant GDB
Date: October 2005
Creator: Dong, Qunfeng; Lawrence, Carolyn J.; Schlueter, Shannon D.; Wilkerson, Matthew D.; Kurtz, Stefan; Brendel, Volker et al
Description: This article discusses comparative plant genomics resources at PlantGDB. Abstract: PlantGDB is a database of plant molecular sequences. Expressed sequence tag (EST) sequences are assembled into contigs that represent tentative unique genes. EST contigs are functionally annotated with information derived from known protein sequences that are highly similar to the putative translation products. Tentative Gene Ontology terms are assigned to match those of the similar sequences identified. Genome survey sequences are assembled similarly. The resulting genome survey sequence contigs are matched to ESTs and conserved protein homologs to identify putative full-length open reading frame-containing genes, which are subsequently provisionally classified according to established gene family designations. For Arabidopsis (Arabidopsis thaliana) and rice (Oryza sativa), the exon-intron boundaries for gene structures are annotated by spliced alignment of ESTs and full-length cDNAs to their respective complete genome sequences. Unique genome browsers have been developed to present all available EST and cDNA evidence for current transcript models. In addition, a number of bioinformatic tools have been integrated at PlantGDB that enable researchers to carry out sequence analyses on-site using both their own data and data residing within the database.
Contributing Partner: UNT College of Arts and Sciences
Permallink:digital.library.unt.edu/ark:/67531/metadc78294/
Comentario: Archipiélago Patagónico. La última frontera
Date: 2005
Creator: Rozzi, Ricardo, 1960-
Description: This article offers comment by the author on the Patagonian Archipelago as the Final Frontier, as written about in a book by Matthew B. Martinic titled, 'Patagonia Archipelago. The Final Frontier.
Contributing Partner: UNT College of Arts and Sciences
Permallink:digital.library.unt.edu/ark:/67531/metadc102295/
Comment on "Modification of graphene properties due to electron-beam irradiation"
Date: December 17, 2009
Creator: Jones, Jason D.; Ecton, Philip A.; Mo, Yudong & Pérez, José M.
Description: This article is a comment on another article titled 'Modification of graphene properties due to electron-beam irradiation'. These articles discuss the modification of graphene properties due to electron-beam irradiation.
Contributing Partner: UNT College of Arts and Sciences
Permallink:digital.library.unt.edu/ark:/67531/metadc83795/
Correlation Function and Generalized Master Equation of Arbitrary Age
Date: June 10, 2005
Creator: Allegrini, Paolo; Aquino, Gerardo; Grigolini, Paolo; Palatella, Luigi; Rosa, Angelo & West, Bruce J.
Description: This article discusses correlation function and generalized master equation of arbitrary age. Abstract: We study a two-state statistical process with a non-Poisson distribution of sojourn times. In accordance with earlier work, we find that this process is characterized by aging and we study three different ways to define the correlation function of arbitrary age of the corresponding dichotomous fluctuation. These three methods yield exact expressions, thus coinciding with the recent result by Godrèche and Luck [J. Stat. Phys. 104, 489 (2001)]. Actually, non-Poisson statistics yields infinite memory at the probability level, thereby breaking any form of Markovian approximation, including the one adopted herein, to find an approximated analytical formula. For this reason, we check the accuracy of this approximated formula by comparing it with the numerical treatment of the second of the three exact expressions. We find that, although not exact, a simple analytical expression for the correlation function of arbitrary age is very accurate. We establish a connection between the correlation function and a generalized master equation of the same age. Thus this formalism, related to models used in glassy materials, allows us to illustrate an approach to the statistical treatment of blinking quantum dots, bypassing the limitations fo ...
Contributing Partner: UNT College of Arts and Sciences
Permallink:digital.library.unt.edu/ark:/67531/metadc40401/
Ciencia y política: perspectiva histórica y modelos alternativos
Date: April 2007
Creator: Mitcham, Carl & Briggle, Adam
Description: This article discusses science and policy. Abstract: Should ethical matters make use of political means to influence the direction of scientific research? To what extent the influence of political and economic competition in the trajectory of scientific research could -or should- be allowed? These questions guide the critical review of the relations between science and policy made by the authors. In order to carry out this task they offer an analysis of the historical antecedents of the policy of science and they also provide comparative data and ethical reflections on the policy of scientific budget. Finally, they explain the reaches of alternative models of science policies.
Contributing Partner: UNT College of Arts and Sciences
Permallink:digital.library.unt.edu/ark:/67531/metadc77226/