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  Partner: UNT College of Arts and Sciences
 Department: Biological Sciences
 Decade: 2010-2019
Identification and Network-Enabled Characterization of Auxin Response Factor Genes in Medicago truncatula

Identification and Network-Enabled Characterization of Auxin Response Factor Genes in Medicago truncatula

Date: December 9, 2016
Creator: Burks, David J. & Azad, Rajeev K.
Description: This article discusses a comprehensive analysis of the Medicago truncatula genome and transcriptome that entailed search for novel Auxin Response Factor genes and the co-expression networks.
Contributing Partner: UNT College of Arts and Sciences
Interspecific Differences in Metabolic Rate and Metabolic Temperature Sensitivity Create Distinct Thermal Ecological Niches in Lizards (Plestiodon)

Interspecific Differences in Metabolic Rate and Metabolic Temperature Sensitivity Create Distinct Thermal Ecological Niches in Lizards (Plestiodon)

Date: October 19, 2016
Creator: Watson, Charles M. & Burggren, Warren W.
Description: This article examines three congeneric lizards from the southeastern United States (Plestiodon fasciatus, P. inexpectatus, and P. laticeps) and hypothesizes that interspecific differences in metabolic temperature sensitivity locally segregates them across their total range.
Contributing Partner: UNT College of Arts and Sciences
Is Exposure to Macondo Oil Reflected in the Otolith Chemistry of Marsh-Resident Fish?

Is Exposure to Macondo Oil Reflected in the Otolith Chemistry of Marsh-Resident Fish?

Date: September 28, 2016
Creator: López-Duarte, Paola C.; Fodrle, F. Joel; Jensen, Olaf P.; Whitehead, Andrew; Galvez, Fernando; Dubansky, Benjamin et al.
Description: This article evaluates otolith microchemistry as a method for assessing oil exposure history.
Contributing Partner: UNT College of Arts and Sciences
Glucose or Altered Ceramide Biosynthesis Mediate Oxygen Deprivation Sensitivity Through Novel Pathways Revealed by Transcriptome Analysis in Caenorhabditis elegans

Glucose or Altered Ceramide Biosynthesis Mediate Oxygen Deprivation Sensitivity Through Novel Pathways Revealed by Transcriptome Analysis in Caenorhabditis elegans

Date: August 5, 2016
Creator: Ladage, Mary L.; King, Skylar D.; Burks, David J.; Quan, Daniel L.; Garcia, Anastacia M.; Azad, Rajeev K. et al.
Description: This article discusses how RNA-sequencing analysis was performed to assess how a glucose-supplemented diet and/or a hyl-2 mutation altered the transcriptome.
Contributing Partner: UNT College of Arts and Sciences
Identification of Novel Genomic Islands in Liverpool Epidemic Strain of Pseudomonas aeruginosa Using Segmentation and Clustering

Identification of Novel Genomic Islands in Liverpool Epidemic Strain of Pseudomonas aeruginosa Using Segmentation and Clustering

Date: August 3, 2016
Creator: Jani, Mehul; Mathee, Kalal & Azad, Rajeev K.
Description: This article utilizes a recursive segmentation and cluster procedure presented as a genome-mining tool, GEMINI, to decipher genomic islands and understand their contributions to the evolution of virulence and antibiotic resistance in Pseudomonas aeruginosa.
Contributing Partner: UNT College of Arts and Sciences
Redefining Agricultural Residues as Bioenergy Feedstocks

Redefining Agricultural Residues as Bioenergy Feedstocks

Date: July 28, 2016
Creator: Caicedo, Marlon; Barros, Jaime & Ordás, Bernardo
Description: This article presents a review of traits relevant to the development of dual purpose varieties is presented with particular emphasis on stover moisture and stay-green.
Contributing Partner: UNT College of Arts and Sciences
ABA is required for the accumulation of APX1 and MBF1c during a combination of water deficit and heat stress

ABA is required for the accumulation of APX1 and MBF1c during a combination of water deficit and heat stress

Date: July 18, 2016
Creator: Zandalinas, Sara I; Balfagón, Damián; Arbona, Vicent; Gómez-Cadenas, Aurelio; Inupakutika, Madhuri A. & Mittler, Ron
Description: This article studies the response of mutants impaired in ABA signalling (abi1-1) and biosynthesis (aba1-1) to a combination of water deficit and heat stress.
Contributing Partner: UNT College of Arts and Sciences
Accumulation of Flavonols over Hydroxycinnamic Acids Favors Oxidative Damage Protetion under Abiotic Stress

Accumulation of Flavonols over Hydroxycinnamic Acids Favors Oxidative Damage Protetion under Abiotic Stress

Date: June 15, 2016
Creator: Martinez, Vicente; Mestre, Teresa C.; Rubio, Francisco; Girones-Vilaplana, Amadeo; Moreno, Diego; Mittler, Ron et al.
Description: This article reports on the characterization of the different antioxidant mechanisms of tomato plants subjected to heat stress, salinity stress, or a combination of both stresses.
Contributing Partner: UNT College of Arts and Sciences
Applications of Fourier Transform Ion Cyclotron Resonance (FT-ICR) and Orbitrap Based High Resolution Mass Spectrometry in Metabolomics and Lipidomics

Applications of Fourier Transform Ion Cyclotron Resonance (FT-ICR) and Orbitrap Based High Resolution Mass Spectrometry in Metabolomics and Lipidomics

Date: May 25, 2016
Creator: Ghaste, Manoj; Mistrik, Robert & Shulaev, Vladimir
Description: This review explores the latest developments in Fourier transform mass spectrometry and Orbitrap based metabolomics technology, its advantages and drawbacks for using in metabolomics and lipidomics studies, and development of novel approaches for processing high resolution mass spectrometry data.
Contributing Partner: UNT College of Arts and Sciences
Epigenetic Inheritance and Its Role in Evolutionary Biology: Re-Evaluation and New Perspectives

Epigenetic Inheritance and Its Role in Evolutionary Biology: Re-Evaluation and New Perspectives

Date: May 25, 2016
Creator: Burggren, Warren W.
Description: This essay poses an argument for epigenetics having a potentially profound role in our understanding of inheritance, natural selection and evolution, and deserving more attention.
Contributing Partner: UNT College of Arts and Sciences
Cardiovascular function, compliance, and connective tissue remodeling in the turtle, Trachemys scripta, following thermal acclimation

Cardiovascular function, compliance, and connective tissue remodeling in the turtle, Trachemys scripta, following thermal acclimation

Date: April 13, 2016
Creator: Keen, Adam N.; Shiels, Holly A. & Crossley II, Dane A.
Description: This article suggests that cold acclimation alters cardiac shunting patterns with an increased R-L shunt flow, achieved through reducing systemic resistance and increasing systemic blood flow.
Contributing Partner: UNT College of Arts and Sciences
Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Date: February 27, 2016
Creator: Veerappan, Vijaykumar; Jani, Mehul; Kadel, Khem; Troiani, Taylor; Gale, Ronny; Mayes, Tyler et al.
Description: This article demonstrates that whole genome sequencing is an efficient approach for identification of causative genes underlying symbiotic nitrogen fixation defective phenotypes in Medicago truncatula Tnt1 insertion mutants obtained via forward genetic screens.
Contributing Partner: UNT College of Arts and Sciences
Post-hatching development of mitochondrial function, organ mass and metabolic rate in two ectotherms, the American alligator (Alligator mississippiensis) and the common snapping turtle (Chelydra serpentina)

Post-hatching development of mitochondrial function, organ mass and metabolic rate in two ectotherms, the American alligator (Alligator mississippiensis) and the common snapping turtle (Chelydra serpentina)

Date: February 22, 2016
Creator: Sirsat, Sarah K.G.; Sirsat, Tushar S.; Price, Edwin R. & Dzialowski, Edward M. (Edward Michael)
Description: This article investigates the metabolism, growth and muscle mitochondrial function in hatchlings of a turtle and a crocodilian, two ectotherms that never develop endothermy.
Contributing Partner: UNT College of Arts and Sciences
Genome Sequences of Streptomyces Phages Amela and Verse

Genome Sequences of Streptomyces Phages Amela and Verse

Date: February 18, 2016
Creator: Layton, Sonya R.; Hemenway, Ryan M.; Munyoki, Christine M.; Barnes, Emory B.; Barnett, Sierra E.; Bond, Alec M. et al.
Description: This article describes Amela and Verse, two Streptomyces phages isolated by enrichment on Streptomyces venezuelae (ATCC 10712) from two different soil samples.
Contributing Partner: UNT College of Arts and Sciences
A toolbox of genes, proteins, metabolites and promoters for improving drought tolerance in soybean includes the metabolite coumestrol and stomatal development genes

A toolbox of genes, proteins, metabolites and promoters for improving drought tolerance in soybean includes the metabolite coumestrol and stomatal development genes

Date: February 9, 2016
Creator: Tripathi, Prateek; Rabara, Roel C.; Reese, R. Neil; Miller, Marissa A.; Rohila, Jai S.; Subramanian, Senthil et al.
Description: This article identifies metabolites, proteins, and genes that are strongly up or down regulated during rapid water stress following remove from a hydroponics system.
Contributing Partner: UNT College of Arts and Sciences
ABA Is Required for Plant Acclimation to a Combination of Salt and Heat Stress

ABA Is Required for Plant Acclimation to a Combination of Salt and Heat Stress

Date: January 29, 2016
Creator: Suzuki, Nobuhiro; Bassil, Elias; Hamilton, Jason S.; Inupakutika, Madhuri A.; Zandalinas, Sara I; Tripathy, Deesha et al.
Description: This article highlights the important role abscisic acid plays in the acclimation of plants to a combination of two different abiotic stresses.
Contributing Partner: UNT College of Arts and Sciences
Phenotypic developmental plasticity induced by preincubation egg storage in chicken embryos (Gallus gallus domesticus)

Phenotypic developmental plasticity induced by preincubation egg storage in chicken embryos (Gallus gallus domesticus)

Date: January 23, 2016
Creator: Branum, Sylvia R.; Tazawa, Hiroshi & Burggren, Warren W.
Description: This article investigates how preincubation egg storage conditions (temperature, duration, hypoxia, and hypercapnia) affects viability, body mass, and physiological variables and functions in day 15 chicken embryos.
Contributing Partner: UNT College of Arts and Sciences
Leukocyte Subset Changes in Response to a 164-km Road Cycle Ride in a Hot Environment

Leukocyte Subset Changes in Response to a 164-km Road Cycle Ride in a Hot Environment

Date: January 15, 2016
Creator: Luk, Hui-Ying; McKenzie, Amy L.; Duplanty, Anthony A.; Budnar, Ronald; Levitt, Danielle; Fernandez, Alex et al.
Description: This article determines the circulating leukocyte subset response to completing the 2013 Hotter'N Hell Hundred recreational 164-km road cycle event in a hot and humid environmental condition.
Contributing Partner: UNT College of Arts and Sciences
Transcriptome analysis of secondary cell wall development in Medicago truncatula

Transcriptome analysis of secondary cell wall development in Medicago truncatula

Date: January 5, 2016
Creator: Wang, Huan-Zhong; Yang, Jung Hyun; Chen, Fang; Torres-Jerez, Ivone; Tang, Yuhong; Wang, Mingyi et al.
Description: This article describes a transcriptome microarray assay and high through-put quantitative real time PCR analysis of Medicago truncatula.
Contributing Partner: UNT College of Arts and Sciences
Flocculation-Related Gene Identification by Whole-Genome Sequencing of Thauera aminoaromatica MZ1T Floc-Defective Mutants

Flocculation-Related Gene Identification by Whole-Genome Sequencing of Thauera aminoaromatica MZ1T Floc-Defective Mutants

Date: December 28, 2015
Creator: Prombutara, P. & Allen, Michael S.
Description: This article discusses the identification of genes responsible for bacterial flocculation using a whole-genome phenotypic-sequencing technique.
Contributing Partner: UNT College of Arts and Sciences
Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis

Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis

Date: December 21, 2015
Creator: Srivastava, Avinash C.; Chen, Fang; Ray, Tui; Pattahil, Sivakumar; Peña, Maria J.; Avci, Utku et al.
Description: This article observes genetic and biochemical support for the importance of folylpolyglutamates in the lignocellulosic pathway and reinforces previous observations that targeting a single FPGS isoform for down-regulation leads to reduced lignin in plants.
Contributing Partner: UNT College of Arts and Sciences
Understanding Water-Stress Responses in Soybean Using Hydroponics System - A Systems Biology Perspective

Understanding Water-Stress Responses in Soybean Using Hydroponics System - A Systems Biology Perspective

Date: December 21, 2015
Creator: Tripathi, Prateek; Rabara, Roel C.; Shulaev, Vladimir; Shen, Qingxi J. & Rushton, Paul J.
Description: This article discusses using a system of reduced complexity like hydroponics to identify the potential candidates for water-stress tolerance by plants.
Contributing Partner: UNT College of Arts and Sciences
Deepwater Horizon Oil Spill as a Case Study for Interdisciplinary Cooperation within Developmental Biology, Environmental Sciences and Physiology

Deepwater Horizon Oil Spill as a Case Study for Interdisciplinary Cooperation within Developmental Biology, Environmental Sciences and Physiology

Date: December 17, 2015
Creator: Burggren, Warren W.; Dubansky, Benjamin; Roberts, Aaron & Alloy, Matthew
Description: This article makes the argument for interdisciplinary teams that bring together scientists with different specialties as an efficient way--and perhaps the only way--to unravel highly complex biological effects of marine oil spills.
Contributing Partner: UNT College of Arts and Sciences
Comparative cell-specific transcriptomics reveals differentiation of C₄ photosynthesis pathways in switchgrass and other C₄ lineages

Comparative cell-specific transcriptomics reveals differentiation of C₄ photosynthesis pathways in switchgrass and other C₄ lineages

Date: December 10, 2015
Creator: Rao, Xiaolan; Lu, Nan; Li, Guifen; Nakashima, Jin; Tang, Yuhong & Dixon, R. A.
Description: This article provides an mesophyll and bundle sheath cell type-specific transcriptome data set from the monocot NAD-malic enzyme subtype switchgrass (Panicum virgatum).
Contributing Partner: UNT College of Arts and Sciences
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