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  Partner: UNT College of Arts and Sciences
 Department: Biological Sciences
 Collection: UNT Scholarly Works
Identification of Novel Genomic Islands in Liverpool Epidemic Strain of Pseudomonas aeruginosa Using Segmentation and Clustering

Identification of Novel Genomic Islands in Liverpool Epidemic Strain of Pseudomonas aeruginosa Using Segmentation and Clustering

Date: August 3, 2016
Creator: Jani, Mehul; Mathee, Kalal & Azad, Rajeev K.
Description: This article utilizes a recursive segmentation and cluster procedure presented as a genome-mining tool, GEMINI, to decipher genomic islands and understand their contributions to the evolution of virulence and antibiotic resistance in Pseudomonas aeruginosa.
Contributing Partner: UNT College of Arts and Sciences
Redefining Agricultural Residues as Bioenergy Feedstocks

Redefining Agricultural Residues as Bioenergy Feedstocks

Date: July 28, 2016
Creator: Caicedo, Marlon; Barros, Jaime & Ordás, Bernardo
Description: This article presents a review of traits relevant to the development of dual purpose varieties is presented with particular emphasis on stover moisture and stay-green.
Contributing Partner: UNT College of Arts and Sciences
ABA is required for the accumulation of APX1 and MBF1c during a combination of water deficit and heat stress

ABA is required for the accumulation of APX1 and MBF1c during a combination of water deficit and heat stress

Date: July 18, 2016
Creator: Zandalinas, Sara I; Balfagón, Damián; Arbona, Vicent; Gómez-Cadenas, Aurelio; Inupakutika, Madhuri A. & Mittler, Ron
Description: This article studies the response of mutants impaired in ABA signalling (abi1-1) and biosynthesis (aba1-1) to a combination of water deficit and heat stress.
Contributing Partner: UNT College of Arts and Sciences
Accumulation of Flavonols over Hydroxycinnamic Acids Favors Oxidative Damage Protetion under Abiotic Stress

Accumulation of Flavonols over Hydroxycinnamic Acids Favors Oxidative Damage Protetion under Abiotic Stress

Date: June 15, 2016
Creator: Martinez, Vicente; Mestre, Teresa C.; Rubio, Francisco; Girones-Vilaplana, Amadeo; Moreno, Diego; Mittler, Ron et al.
Description: This article reports on the characterization of the different antioxidant mechanisms of tomato plants subjected to heat stress, salinity stress, or a combination of both stresses.
Contributing Partner: UNT College of Arts and Sciences
Applications of Fourier Transform Ion Cyclotron Resonance (FT-ICR) and Orbitrap Based High Resolution Mass Spectrometry in Metabolomics and Lipidomics

Applications of Fourier Transform Ion Cyclotron Resonance (FT-ICR) and Orbitrap Based High Resolution Mass Spectrometry in Metabolomics and Lipidomics

Date: May 25, 2016
Creator: Ghaste, Manoj; Mistrik, Robert & Shulaev, Vladimir
Description: This review explores the latest developments in Fourier transform mass spectrometry and Orbitrap based metabolomics technology, its advantages and drawbacks for using in metabolomics and lipidomics studies, and development of novel approaches for processing high resolution mass spectrometry data.
Contributing Partner: UNT College of Arts and Sciences
Epigenetic Inheritance and Its Role in Evolutionary Biology: Re-Evaluation and New Perspectives

Epigenetic Inheritance and Its Role in Evolutionary Biology: Re-Evaluation and New Perspectives

Date: May 25, 2016
Creator: Burggren, Warren W.
Description: This essay poses an argument for epigenetics having a potentially profound role in our understanding of inheritance, natural selection and evolution, and deserving more attention.
Contributing Partner: UNT College of Arts and Sciences
Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Date: February 27, 2016
Creator: Veerappan, Vijaykumar; Jani, Mehul; Kadel, Khem; Troiani, Taylor; Gale, Ronny; Mayes, Tyler et al.
Description: This article demonstrates that whole genome sequencing is an efficient approach for identification of causative genes underlying symbiotic nitrogen fixation defective phenotypes in Medicago truncatula Tnt1 insertion mutants obtained via forward genetic screens.
Contributing Partner: UNT College of Arts and Sciences
Post-hatching development of mitochondrial function, organ mass and metabolic rate in two ectotherms, the American alligator (Alligator mississippiensis) and the common snapping turtle (Chelydra serpentina)

Post-hatching development of mitochondrial function, organ mass and metabolic rate in two ectotherms, the American alligator (Alligator mississippiensis) and the common snapping turtle (Chelydra serpentina)

Date: February 22, 2016
Creator: Sirsat, Sarah K.G.; Sirsat, Tushar S.; Price, Edwin R. & Dzialowski, Edward M. (Edward Michael)
Description: This article investigates the metabolism, growth and muscle mitochondrial function in hatchlings of a turtle and a crocodilian, two ectotherms that never develop endothermy.
Contributing Partner: UNT College of Arts and Sciences
Genome Sequences of Streptomyces Phages Amela and Verse

Genome Sequences of Streptomyces Phages Amela and Verse

Date: February 18, 2016
Creator: Layton, Sonya R.; Hemenway, Ryan M.; Munyoki, Christine M.; Barnes, Emory B.; Barnett, Sierra E.; Bond, Alec M. et al.
Description: This article describes Amela and Verse, two Streptomyces phages isolated by enrichment on Streptomyces venezuelae (ATCC 10712) from two different soil samples.
Contributing Partner: UNT College of Arts and Sciences
A toolbox of genes, proteins, metabolites and promoters for improving drought tolerance in soybean includes the metabolite coumestrol and stomatal development genes

A toolbox of genes, proteins, metabolites and promoters for improving drought tolerance in soybean includes the metabolite coumestrol and stomatal development genes

Date: February 9, 2016
Creator: Tripathi, Prateek; Rabara, Roel C.; Reese, R. Neil; Miller, Marissa A.; Rohila, Jai S.; Subramanian, Senthil et al.
Description: This article identifies metabolites, proteins, and genes that are strongly up or down regulated during rapid water stress following remove from a hydroponics system.
Contributing Partner: UNT College of Arts and Sciences
ABA Is Required for Plant Acclimation to a Combination of Salt and Heat Stress

ABA Is Required for Plant Acclimation to a Combination of Salt and Heat Stress

Date: January 29, 2016
Creator: Suzuki, Nobuhiro; Bassil, Elias; Hamilton, Jason S.; Inupakutika, Madhuri A.; Zandalinas, Sara I; Tripathy, Deesha et al.
Description: This article highlights the important role abscisic acid plays in the acclimation of plants to a combination of two different abiotic stresses.
Contributing Partner: UNT College of Arts and Sciences
Phenotypic developmental plasticity induced by preincubation egg storage in chicken embryos (Gallus gallus domesticus)

Phenotypic developmental plasticity induced by preincubation egg storage in chicken embryos (Gallus gallus domesticus)

Date: January 23, 2016
Creator: Branum, Sylvia R.; Tazawa, Hiroshi & Burggren, Warren W.
Description: This article investigates how preincubation egg storage conditions (temperature, duration, hypoxia, and hypercapnia) affects viability, body mass, and physiological variables and functions in day 15 chicken embryos.
Contributing Partner: UNT College of Arts and Sciences
Transcriptome analysis of secondary cell wall development in Medicago truncatula

Transcriptome analysis of secondary cell wall development in Medicago truncatula

Date: January 5, 2016
Creator: Wang, Huan-Zhong; Yang, Jung Hyun; Chen, Fang; Torres-Jerez, Ivone; Tang, Yuhong; Wang, Mingyi et al.
Description: This article describes a transcriptome microarray assay and high through-put quantitative real time PCR analysis of Medicago truncatula.
Contributing Partner: UNT College of Arts and Sciences
Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis

Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis

Date: December 21, 2015
Creator: Srivastava, Avinash C.; Chen, Fang; Ray, Tui; Pattahil, Sivakumar; Peña, Maria J.; Avci, Utku et al.
Description: This article observes genetic and biochemical support for the importance of folylpolyglutamates in the lignocellulosic pathway and reinforces previous observations that targeting a single FPGS isoform for down-regulation leads to reduced lignin in plants.
Contributing Partner: UNT College of Arts and Sciences
Understanding Water-Stress Responses in Soybean Using Hydroponics System - A Systems Biology Perspective

Understanding Water-Stress Responses in Soybean Using Hydroponics System - A Systems Biology Perspective

Date: December 21, 2015
Creator: Tripathi, Prateek; Rabara, Roel C.; Shulaev, Vladimir; Shen, Qingxi J. & Rushton, Paul J.
Description: This article discusses using a system of reduced complexity like hydroponics to identify the potential candidates for water-stress tolerance by plants.
Contributing Partner: UNT College of Arts and Sciences
Deepwater Horizon Oil Spill as a Case Study for Interdisciplinary Cooperation within Developmental Biology, Environmental Sciences and Physiology

Deepwater Horizon Oil Spill as a Case Study for Interdisciplinary Cooperation within Developmental Biology, Environmental Sciences and Physiology

Date: December 17, 2015
Creator: Burggren, Warren W.; Dubansky, Benjamin; Roberts, Aaron & Alloy, Matthew
Description: This article makes the argument for interdisciplinary teams that bring together scientists with different specialties as an efficient way--and perhaps the only way--to unravel highly complex biological effects of marine oil spills.
Contributing Partner: UNT College of Arts and Sciences
Comparative cell-specific transcriptomics reveals differentiation of C₄ photosynthesis pathways in switchgrass and other C₄ lineages

Comparative cell-specific transcriptomics reveals differentiation of C₄ photosynthesis pathways in switchgrass and other C₄ lineages

Date: December 10, 2015
Creator: Rao, Xiaolan; Lu, Nan; Li, Guifen; Nakashima, Jin; Tang, Yuhong & Dixon, R. A.
Description: This article provides an mesophyll and bundle sheath cell type-specific transcriptome data set from the monocot NAD-malic enzyme subtype switchgrass (Panicum virgatum).
Contributing Partner: UNT College of Arts and Sciences
Activation of apoptosis in NAF-1-deficient human epithelial breast cancer cells

Activation of apoptosis in NAF-1-deficient human epithelial breast cancer cells

Date: November 11, 2015
Creator: Holt, Sarah H.; Darash-Yahana, Merav; Sohn, Yang Sung; Song, Luhua; Karmi, Ola; Tamir, Sagi et al.
Description: This article shows that small hairpin RNA-mediated suppresion of NAF-1 results in the activation of apoptosis in epithelial breast cancer cells and xenograft tumors.
Contributing Partner: UNT College of Arts and Sciences
Crystal structure of (3E,5E)-3,5-bis[4-(diethylazaniumyl)benzylidene]-1-methyl-4-oxopiperidin-1-ium trichloride dihydrate: a potential biophotonic material

Crystal structure of (3E,5E)-3,5-bis[4-(diethylazaniumyl)benzylidene]-1-methyl-4-oxopiperidin-1-ium trichloride dihydrate: a potential biophotonic material

Date: November 4, 2015
Creator: Nesterov, Volodymyr V.; Zakharov, Lev N.; Nesterov, Vladimir N. & Shulaev, Vladimir
Description: This article describes the crystal structure of the title compound, and examines application as an agent for locating cancer cells with two-photon excited fluorescence as as a potential agent for a photodynamic treatment of cancer. This article includes supporting information with computing details of the study.
Contributing Partner: UNT College of Arts and Sciences
Comparing interval estimates for small sample ordinal CFA models

Comparing interval estimates for small sample ordinal CFA models

Date: October 30, 2015
Creator: Natesan, Prathiba
Description: This article compares Bayesian, Robust maximum likelihood, and asymptotically generalized least squares interval estimates of factor correlations in ordinal confirmatory factor analysis models for small sample data.
Contributing Partner: UNT College of Arts and Sciences
Cancer-Related NEET Proteins Transfer 2Fe-2S Clusters to Anamorsin, a Protein Required for Cytosolic Iron-Sulfur Cluster Biogenesis

Cancer-Related NEET Proteins Transfer 2Fe-2S Clusters to Anamorsin, a Protein Required for Cytosolic Iron-Sulfur Cluster Biogenesis

Date: October 8, 2015
Creator: Lipper, Colin H.; Paddock, Mark L.; Onuchic, José N.; Mittler, Ron; Nechushtai, Rachel & Jennings, Patricia A.
Description: This article reports the first physiological 2Fe-2S cluster acceptor for both NEET proteins as human Anamorsin (also known as cytokine induced apoptosis inhibitor-1; CIAPIN-1).
Contributing Partner: UNT College of Arts and Sciences
Complete Genome Sequence of a Cyanotroph, Pseudomonas fluorescens NCIMB 11764, Employing Single-Molecule Real-Time Technology

Complete Genome Sequence of a Cyanotroph, Pseudomonas fluorescens NCIMB 11764, Employing Single-Molecule Real-Time Technology

Date: October 1, 2015
Creator: Jones, Lauren B. & Kunz, Daniel A.
Description: This article reports the application of single-molecule real-time sequencing for determining the entire genome structure of the cyanotroph Pseudomonas fluorescens NCIMB 11764.
Contributing Partner: UNT College of Arts and Sciences
Computational inference of the structure and regulation of the lignin pathway in Panicum virgatum

Computational inference of the structure and regulation of the lignin pathway in Panicum virgatum

Date: September 17, 2015
Creator: Faraji, Mojdeh; Fonseca, Luis L.; Escamilla-Treviño, Luis; Dixon, R. A. & Voit, Eberhard O.
Description: This article uses a systems biological modeling approach to address the challenge of in vivo measurements to elucidate the structure and regulation of the lignin pathway through a computational characterization of alternate candidate topologies.
Contributing Partner: UNT College of Arts and Sciences
Lipidomic Analysis of Endocannabinoid Signaling: Targeted Metabolite Identification and Quantification

Lipidomic Analysis of Endocannabinoid Signaling: Targeted Metabolite Identification and Quantification

Date: September 9, 2015
Creator: Keereetaweep, Jantana & Chapman, Kent D.
Description: This article reviews several methodologies to quantify endocannabinoids in various biological systems.
Contributing Partner: UNT College of Arts and Sciences
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