 Cooperationinduced Criticality in Neural Networks
 The human brain is considered to be the most complex and powerful informationprocessing device in the known universe. The fundamental concepts behind the physics of complex systems motivate scientists to investigate the human brain as a collective property emerging from the interaction of thousand agents. In this dissertation, I investigate the emergence of cooperationinduced properties in a system of interacting units. I demonstrate that the neural network of my research generates a series of properties such as avalanche distribution in size and duration coinciding with the experimental results on neural networks both in vivo and in vitro. Focusing attention on temporal complexity and fractal index of the system, I discuss how to define an order parameter and phase transition. Criticality is assumed to correspond to the emergence of temporal complexity, interpreted as a manifestation of nonPoisson renewal dynamics. In addition, I study the transmission of information between two networks to confirm the criticality and discuss how the network topology changes over time in the light of Hebbian learning. digital.library.unt.edu/ark:/67531/metadc283813/
 A New Approach for Transition Metal Free Magnetic Sic: Defect Induced Magnetism After Selfion Implantation
 SiC has become an attractive wide bandgap semiconductor due to its unique physical and electronic properties and is widely used in high temperature, high frequency, high power and radiation resistant applications. SiC has been used as an alternative to Si in harsh environments such as in the oil industry, nuclear power systems, aeronautical, and space applications. SiC is also known for its polytypism and among them 3CSiC, 4HSiC and 6HSiC are the most common polytypes used for research purposes. Among these polytypes 4HSiC is gaining importance due to its easy commercial availability with a large bandgap of 3.26 eV at room temperature. Controlled creation of defects in materials is an approach to modify the electronic properties in a way that new functionality may result. SiC is a promising candidate for defectinduced magnetism on which spintronic devices could be developed. The defects considered are of room temperature stable vacancy types, eliminating the need for magnetic impurities, which easily diffuse at room temperature. Impurity free vacancy type defects can be created by implanting the host atoms of silicon or carbon. The implantation fluence determines the defect density, which is a critical parameter for defect induced magnetism. Therefore, we have studied the influence of low fluence low energy silicon and carbon implantation on the creation of defects in ntype 4HSiC. The characterization of the defects in these implanted samples was performed using the techniques, RBSchanneling and Raman spectroscopy. We have also utilized these characterization techniques to analyze defects created in much deeper layers of the SiC due to implantation of high energy nitrogen ions. The experimentally determined depths of the Si damage peaks due to low energy (60 keV) Si and C ions with low fluences (< 1015 cm2) are consistent with the SRIM2011 simulations. From RBSC Si sublattice measurements for different fluences (1.1×1014 cm2 to 3.2×1014 cm2) of Si implantation in 4HSiC, the Si vacancy density is estimated to range from 1.29×1022 cm3 to 4.57×1022 cm2, corresponding to average vacancy distances of 4.26 Å to 2.79 Å at the damage peak (50±5 nm). Similarly, for C implanted fluences (1.85×1014 cm2 to 1×1015 cm2), the Si vacancy density varies from 1.37×1022 cm3 to 4.22×1022 cm3 with the average vacancy distances from 4.17 Å to 2.87 Å at the damage peak (110±10 nm). From the Raman spectroscopy, the implantationinduced lattice disorders calculated along the caxis (LO mode) and perpendicular to caxis (TO mode) in 4HSiC are found to be similar. Furthermore, the results obtained from SQUID measurements in C implanted ntype 4HSiC sample with fluences ranging from 1×1012 to 1.7×1016 ions/cm2 have been discussed. The implanted samples showed diamagnetism similar to the unimplanted sample. To date, to our best of knowledge, no experimental work has been reported on investigating defect induced magnetism for selfion implantation in ntype 4HSiC. These first reports of experimental results can provide useful information in future studies for a better understanding of selfion implantation in SiCbased DMS. digital.library.unt.edu/ark:/67531/metadc271849/
 Zinc Oxide Nanoparticles for Nonlinear Bioimaging, Cell Detection and Selective Cell Destruction

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Light matter interactions have led to a great part of our current understanding of the universe. When light interacts with matter it affects the properties of both the light and the matter. Visible light, being in the region that the human eye can "see," was one of the first natural phenomenon we used to learn about our universe. The application of fundamental physics research has spilled over into other fields that were traditionally separated from physics, being considered two different sciences. Current physics research has applications in all scientific fields. By taking a more physical approach to problems in fields such as chemistry and biology, we have furthered our knowledge of both. Nanocrystals have many interesting optical properties. Furthermore, the size and properties of nanocrystals has given them applications in materials ranging from solar cells to sunscreens. By understanding and controlling their interactions with systems we can utilize them to increase our knowledge in other fields of science, such as biology. Nanocrystals exhibit optical properties superior to currently used fluorescent dyes. By replacing molecular dyes with nanoparticles we can reduce toxicity, increase resolution and have better cellular targeting abilities. They have also shown to have toxicity to cancer and antibacterial properties. With the understanding of how to target specific cells in vitro as well as in vivo, nanoparticles have the potential to be used as highly cell specific nanodrugs that can aid in the fight against cancer and the more recent fight against antibiotic resistant bacteria. This dissertation includes our work on bioimaging as well as our novel drug delivery system. An explanation of toxicity associated with ZnO nanoparticles and how we can use it and the nonlinear optical properties of ZnO for nanodrugs and nanoprobes is presented. digital.library.unt.edu/ark:/67531/metadc271908/  Theoretical and Experimental Investigations of Peg Based Thermo Sensitive Hydro Microgel
 Poly ethylene glycol (PEG) based microgels were synthesized and investigated. The PEG microgel has the same phase transition as the traditional poly Nisopropylacrylamide (PNIPAM). As a good substitute of PNIPAM, PEG microgel exhibits many advantages: it is easier to control the lower critical solution temperature (LCST) of the microgel by changing the component of copolymers; it has a more solid spherical coreshell structure to have a double thermo sensitivity; it is straightforward to add other sensitivities such as pH, magnetic field or organic functional groups; it readily forms a photonic crystal structure exhibiting Bragg diffraction; and, most importantly, the PEG microgel is biocompatible with human body and has been approved by FDA while PNIPAM has not. PEG microgels with coreshell structure are synthesized with a twostep free radical polymerization and characterized with DLS, SLS and UV–Vis. The dynamic mechanics of melting and recrystallizing of the PEG coreshell microgel are presented and discussed. Photonic crystals of PEG microgels were synthesized and characterized. The crystal can be isolated in a thin film or a bulk column. The phase transition of PEG microgel was simulated with the mean field theory. The enthalpy and entropy of phase transition can be estimated from the best fit to theoretical calculation with experimental data. digital.library.unt.edu/ark:/67531/metadc177187/
 A Nonequilibrium Approach to Scale Free Networks
 Many processes and systems in nature and society can be characterized as large numbers of discrete elements that are (usually nonuniformly) interrelated. These networks were long thought to be random, but in the late 1990s, Barabási and Albert found that an underlying structure did in fact exist in many natural and technological networks that are now referred to as scale free. Since then, researchers have gained a much deeper understanding of this particular form of complexity, largely by combining graph theory, statistical physics, and advances in computing technology. This dissertation focuses on outofequilibrium dynamic processes as they unfold on these complex networks. Diffusion in networks of noninteracting nodes is shown to be temporally complex, while equilibrium is represented by a stable state with Poissonian fluctuations. Scale free networks achieve equilibrium very quickly compared to regular networks, and the most efficient are those with the lowest inverse power law exponent. Temporally complex diffusion also occurs in networks with interacting nodes under a cooperative decisionmaking model. At a critical value of the cooperation parameter, the most efficient scale free network achieves consensus almost as quickly as the equivalent alltoall network. This finding suggests that the ubiquity of scale free networks in nature is due to Zipf's principle of least effort. It also suggests that an efficient scale free network structure may be optimal for real networks that require high connectivity but are hampered by high link costs. digital.library.unt.edu/ark:/67531/metadc149609/
 Theoretical and Experimental Investigations Concerning Microgels of Varied Spherical Geometries
 Polymer gels have been studied extensively due to their ability to simulate biological tissues and to swell or collapse reversibly in response to external stimuli. This work presents a variety of studies using polyNisopropylacrylamide (PNIPA) hydrogels. The projects have been carried out both in the lab of Dr. Zhibing Hu and in collaboration with others outside of UNT: (1) an analysis of the swelling kinetics of microgel spherical shells prepared using a novel design of microfluidic devices; (2) a comparison of the drugrelease rates between nanoparticle structures having either core or corewithshell (coreshell) designs; (3) an investigation into the thermodynamics of swelling for microgels of exceedingly small size. digital.library.unt.edu/ark:/67531/metadc149680/
 Ultrafast Spectroscopy of Hybrid Ingan/gan Quantum Wells
 Group III nitrides are efficient light emitters. The modification of internal optoelectronic properties of these materials due to strain, external or internal electric field are an area of interest. Insertion of metal nanoparticles (MNPs) (Ag, Au etc) inside the Vshaped inverted hexagonal pits (IHP) of InGaN/GaN quantum wells (QWs) offers the potential of improving the light emission efficiencies. We have observed redshift and blueshift due to the Au MNPs and Ag MNPs respectively. This shift could be due to the electric field created by the MNPs through electrostatic image charge. We have studied the ultrafast carrier dynamics of carriers in hybrid InGaN/GaN QWs. The change in quantum confinement stark effect due to MNPs plays an important role for slow and fast carrier dynamics. We have also observed the image charge effect on the ultrafast differential transmission measurement due to the MNPs. We have studied the nonlinear absorption spectroscopy of these materials. The QWs behave as a discharging of a nanocapacitor for the screening of the piezoelectric field due to the photoexcited carriers. We have separated out screening and excitonic bleaching components from the main differential absorption spectra of InGaN/GaN QWs. digital.library.unt.edu/ark:/67531/metadc149635/
 Criticality in Cooperative Systems
 Cooperative behavior arises from the interactions of single units that globally produce a complex dynamics in which the system acts as a whole. As an archetype I refer to a flock of birds. As a result of cooperation the whole flock gets special abilities that the single individuals would not have if they were alone. This research work led to the discovery that the function of a flock, and more in general, that of cooperative systems, surprisingly rests on the occurrence of organizational collapses. In this study, I used cooperative systems based on selfpropelled particle models (the flock models) which have been proved to be virtually equivalent to sociological network models mimicking the decision making processes (the decision making model). The critical region is an intermediate condition between a highly disordered state and a strong ordered one. At criticality the waiting times distribution density between two consecutive collapses shows an inverse power law form with an anomalous statistical behavior. The scientific evidences are based on measures of information theory, correlation in time and space, and fluctuation statistical analysis. In order to prove the benefit for a system to live at criticality, I made a flock system interact with another similar system, and then observe the information transmission for different disturbance values. I proved that at criticality the transfer of information gets the maximal efficiency. As last step, the flock model has been shown that, despite its simplicity, is sufficiently a realistic model as proved via the use of 3D simulations and computer animations. digital.library.unt.edu/ark:/67531/metadc271910/
 Effects of Dissipation on Propagation of Surface Electromagnetic and Acoustic Waves
 With the recent emergence of the field of metamaterials, the study of subwavelength propagation of plane waves and the dissipation of their energy either in the form of Joule losses in the case of electomagnetic waves or in the form of viscous dissipation in the case of acoustic waves in different interfaced media assumes great importance. with this motivation, I have worked on problems in two different areas, viz., plasmonics and surface acoustics. the first part (chapters 2 & 3) of the dissertation deals with the emerging field of plasmonics. Researchers have come up with various designs in an efort to fabricate efficient plasmonic waveguides capable of guiding plasmonic signals. However, the inherent dissipation in the form of Joule losses limits efficient usage of surface plasmon signal. a dielectricmetal¬dielectric planar structure is one of the most practical plasmonic structures that can serve as an efficient waveguide to guide electromagnetic waves along the metaldielectric boundary. I present here a theoretical study of propagation of surface plasmons along a symmetric dielectricmetaldielectric structure and show how proper orientation of the optical axis of the anisotropic substrate enhances the propagation length. an equation for propagation length is derived in a wide range of frequencies. I also show how the frequency of coupled surface plasmons can be modulated by changing the thickness of the metal film. I propose a KronigPenny model for the plasmonic crystal, which in the long wavelength limit, may serve as a homogeneous dielectric substrate with high anisotropy which do not exist for natural optical crystals. in the second part (chapters 4 & 5) of the dissertation, I discuss an interesting effect of extraordinary absorption of acoustic energy due to resonant excitation of Rayleigh waves in a narrow water channel clad between two metal plates. Starting from the elastic properties of the metal plates, I derive a dispersion equation that gives resonant frequencies, which coincide with those observed in the experiment that was performed by Wave Phenomena Group at Polytechnic University of Valencia, Spain. Two eigenmodes with different polarizations and phase velocities are obtained from the dispersion equation. at certain critical aperture of the channel, an interesting cutoff effect, which is unusual for an acoustic wave, is observed for one of the eigenmodes with symmetric distribution of the pressure field. the theoretical prediction of the coupling and synchronization of Rayleigh waves strongly supports the experimentally measured shift of the resonant frequencies in the transmission spectra with channel aperture. the observed high level of absorption may find applications in designing metamaterial acoustic absorbers. digital.library.unt.edu/ark:/67531/metadc115126/
 Electrostatic Effects in IIIV Semiconductor Based Metaloptical Nanostructures

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The modification of the band edge or emission energy of semiconductor quantum well light emitters due to image charge induced phenomenon is an emerging field of study. This effect observed in quantum well light emitters is critical for all metaloptics based light emitters including plasmonics, or nanometallic electrode based light emitters. This dissertation presents, for the first time, a systematic study of the image charge effect on semiconductor–metal systems. the necessity of introducing the image charge interactions is demonstrated by experiments and mathematical methods for semiconductormetal image charge interactions are introduced and developed. digital.library.unt.edu/ark:/67531/metadc115090/  Electrostatic Mechanism of Emission Enhancement in Hybrid Metalsemiconductor Lightemitting Heterostructures
 IIIV nitrides have been put to use in a variety of applications including laser diodes for modern DVD devices and for solidstate white lighting. Plasmonics has come to the foreground over the past decade as a means for increasing the internal quantum efficiency (IQE) of devices through resonant interaction with surface plasmons which exist at metal/dielectric interfaces. Increases in emission intensity of an order of magnitude have been previously reported using silver thinfilms on InGaN/GaN MQWs. the dependence on resonant interaction between the plasmons and the light emitter limits the applications of plasmonics for light emission. This dissertation presents a new nonresonant mechanism based on electrostatic interaction of carriers with induced image charges in a nearby metallic nanoparticle. Enhancement similar in strength to that of plasmonics is observed, without the restrictions imposed upon resonant interactions. in this work we demonstrate several key features of this new interaction, including intensitydependent saturation, increase in the radiative recombination lifetime, and strongly inhomogeneous light emission. We also present a model for the interaction based on the aforementioned image charge interactions. Also discussed are results of work done in the course of this research resulting in the development of a novel technique for strain measurement in lightemitting structures. This technique makes use of a spectral fitting model to extract information about electronphonon interactions in the sample which can then be related to strain using theoretical modeling. digital.library.unt.edu/ark:/67531/metadc115113/
 Modification of Graphene Properties: Electron Induced Reversible Hydrogenation, Oxidative Etching and Layerbylayer Thinning
 In this dissertation, I present the mechanism of graphene hydrogenation via three different electron sources: scanning electron microscopy, ebeam irradiation and H2 and He plasma irradiation. in each case, hydrogenation occurs due to electron impact fragmentation of adsorbed water vapor from the sample preparation process. in the proposed model, secondary and backscattered electrons generated from incident electron interactions with the underlying silicon substrate are responsible for the dissociation of water vapor. Chemisorbed H species from the dissociation are responsible for converting graphene into hydrogenated graphene, graphane. These results may lead to higher quality graphane films having a larger band gap than currently reported. in addition, the dissertation presents a novel and scalable method of controllably removing single atomic planes from multilayer graphene using electron irradiation from an intense He plasma under a positive sample bias. As the electronic properties or multilayer graphene are highly dependent on the number of layers, n, reducing n in certain regions has many benefits. for example, a mask in conjunction with this thinning method could be used for device applications. digital.library.unt.edu/ark:/67531/metadc115101/
 Temporal Properties Of Dynamic Processes On Complex Networks
 Many social, biological and technological systems can be viewed as complex networks with a large number of interacting components. However despite recent advancements in network theory, a satisfactory description of dynamic processes arising in such cooperative systems is a subject of ongoing research. In this dissertation the emergence of dynamical complexity in networks of interacting stochastic oscillators is investigated. In particular I demonstrate that networks of two and three state stochastic oscillators present a secondorder phase transition with respect to the strength of coupling between individual units. I show that at the critical point fluctuations of the global order parameter are characterized by an inversepower law distribution and I assess their renewal properties. Additionally, I study the effect that different types of perturbation have on dynamical properties of the model. I discuss the relevance of those observations for the transmission of information between complex systems. digital.library.unt.edu/ark:/67531/metadc103403/
 High Efficiency High Power Blue Laser by Resonant Doubling in PPKTP
 I developed a high power blue laser for use in scientific and technical applications (eg. precision spectroscopy, semiconductor inspection, flow cytometry, etc). It is linearly polarized, single longitudinal and single transverse mode, and a convenient fiber coupled continuous wave (cw) laser source. My technique employs external cavity frequency doubling and provides better power and beam quality than commercially available blue diode lasers. I use a fiber Bragg grating (FBG) stabilized infrared (IR) semiconductor laser source with a polarization maintaining (PM) fiber coupled output. Using a custom made optical and mechanical design this output is coupled with a mode matching efficiency of 96% into the doubling cavity. With this carefully designed and optimized cavity, measurements were carried out at various fundamental input powers. A net efficie ncy of 81 % with an output power of 680 mW at 486 nm was obtained using 840 mW of IR input. Also I report an 87.5 % net efficiency in coupling of blue light from servo locked cavity into a single mode PM fiber. Thus I have demonstrated a total fiber to fiber efficiency of 71% can be achieved in our approach using periodically poled potassium titanyl phosphate (PPKTP). To obtain these results, all losses in the system were carefully studied and minimized. digital.library.unt.edu/ark:/67531/metadc103306/
 Nanoscale Materials Applications: Thermoelectrical, Biological, and Optical Applications with Nanomanipulation Technology
 In a subwavelength scale, even approaching to the atomic scale, nanoscale physics shows various novel phenomena. Since it has been named, nanoscience and nanotechnology has been employed to explore and exploit this small scale world. For example, with various functionalized features, nanowire (NW) has been making its leading position in the researches of physics, chemistry, biology, and engineering as a miniaturized building block. Its individual characteristic shows superior and unique features compared with its bulk counterpart. As one part of these research efforts and progresses, and with a part of the fulfillment of degree study, novel methodologies and device structures in nanoscale were devised and developed to show the abilities of high performing thermoelectrical, biological, and optical applications. A single βSiC NW was characterized for its thermoelectric properties (thermal conductivity, Seebeck coefficient, and figure of merit) to compare with its bulk counterpart. The combined structure of Ag NW and ND was made to exhibit its ability of clear imaging of a fluorescent cell. And a plasmonic nanosture of silver (Ag) nanodot array and a βSiC NW was fabricated to show a high efficient light harvesting device that allows us to make a better efficient solar cell. Novel nanomanipulation techniques were developed and employed in order to fabricate all of these measurement platforms. Additionally, one of these methodological approaches was used to successfully isolate a few layer graphene. digital.library.unt.edu/ark:/67531/metadc84238/
 Ion Beam Synthesis of Carbon Assisted Nanosystems in Silicon Based Substrates
 The systematic study of the formation of βSiC formed by low energy carbon ion (C)implantation into Si followed by high temperature annealing is presented. The research is performed to explore the optimal annealing conditions. The formation of crystalline βSiC is clearly observed in the sample annealed at 1100 °C for a period of 1 hr. Quantitative analysis is performed in the formation of βSiC by the process of implantation of different carbon ion fluences of 1×1017, 2×1017, 5×1017, and 8×1017 atoms /cm2 at an ion energy of 65 keV into Si. It is observed that the average size of βSiC crystals decreased and the amount of βSiC crystals increased with the increase in the implanted fluences when the samples were annealed at 1100°C for 1 hr. However, it is observed that the amount of βSiC linearly increased with the implanted fluences up to 5×1017 atoms /cm2. Above this fluence the amount of βSiC appears to saturate. The stability of graphitic CC bonds at 1100°C limits the growth of SiC precipitates in the sample implanted at a fluence of 8×1017 atoms /cm2 which results in the saturation behavior of SiC formation in the present study. Secondly, the carbon cluster formation process in silica and the characterization of formed clusters is presented. Silicon dioxide layers ~500 nm thick are thermally grown on a Si (100) wafer. The SiO2 layers are then implanted with 70 keV carbon ions at a fluence of 5×1017 atoms/cm2. The implanted samples are annealed 1100 °C for different time periods of 10 min., 30 min., 60 min., 90 min., and 120 min., in the mixture of argon and hydrogen gas (96 % Ar + 4% hydrogen). Photoluminescence spectroscopy reveals UV to visible emission from the samples. A detail mechanism of the photoluminescence and its possible origin is discussed by correlating the structural and optical properties of the samples. Raman spectroscopy, Xray photoelectron spectroscopy, Xray diffraction, spectroscopy, photoluminescence spectroscopy, and transmission electron microscopy are used to characterize the samples. digital.library.unt.edu/ark:/67531/metadc68033/
 Thorium and Uranium Mshell Xray Production Cross Sections for 0.4 – 4.0 MeV Protons, 0.4  6.0 MeV Helium Ions, 4.5 – 11.3 MeV Carbon Ions, and 4.5 – 13.5 MeV Oxygen Ions.
 The Mshell xray production cross section for thorium and uranium have been determined for protons of energy 0.4  4.0 MeV, helium ions of energy 0.4  6.0 MeV, carbon ions of energy 4.5  11.3 MeV and oxygen ions of energy 4.5  13.5 MeV. The total cross sections and the cross sections for individual xray peaks in the spectrum, consisting of the following transitions Mz (M4N2, M5N3, M4N3), Ma (M5N6,7), Mb (M4N6, M5O3, M4 O2), and Mg (M4O3, M5P3, M3N4, M3N5), were compared to the theoretical values determined from the PWBA + OBKN and ECUSAR. The theoretical values for the carbon and oxygen ions were also modified to take into account the effects of multiple ionizations of the target atom by the heavier ions. It is shown that the results of the ECUSAR theory tend to provide better agreement with the experimental data. digital.library.unt.edu/ark:/67531/metadc68032/
 A Determination of the Fine Structure Constant Using Precision Measurements of Helium Fine Structure
 Spectroscopic measurements of the helium atom are performed to high precision using an atomic beam apparatus and electrooptic laser techniques. These measurements, in addition to serving as a test of helium theory, also provide a new determination of the fine structure constant α. An apparatus was designed and built to overcome limitations encountered in a previous experiment. Not only did this allow an improved level of precision but also enabled new consistency checks, including an extremely useful measurement in 3He. I discuss the details of the experimental setup along with the major changes and improvements. A new value for the J = 0 to 2 fine structure interval in the 23P state of 4He is measured to be 31 908 131.25(30) kHz. The 300 Hz precision of this result represents an improvement over previous results by more than a factor of three. Combined with the latest theoretical calculations, this yields a new determination of α with better than 5 ppb uncertainty, α1 = 137.035 999 55(64). digital.library.unt.edu/ark:/67531/metadc31547/
 EEG, Alpha Waves and Coherence
 This thesis addresses some theoretical issues generated by the results of recent analysis of EEG time series proving the brain dynamics are driven by abrupt changes making them depart from the ordinary Poisson condition. These changes are renewal, unpredictable and nonergodic. We refer to them as crucial events. How is it possible that this form of randomness be compatible with the generation of waves, for instance alpha waves, whose observation seems to suggest the opposite view the brain is characterized by surprisingly extended coherence? To shed light into this apparently irretrievable contradiction we propose a model based on a generalized form of Langevin equation under the influence of a periodic stimulus. We assume that there exist two different forms of time, a subjective form compatible with Poisson statistical physical and an objective form that is accessible to experimental observation. The transition from the former to the latter form is determined by the brain dynamics interpreted as emerging from the cooperative interaction among many units that, in the absence of cooperation would generate Poisson fluctuations. We call natural time the brain internal time and we make the assumption that in the natural time representation the time evolution of the EEG variable y(t) is determined by a Langevin equation perturbed by a periodic process that in this time representation is hardly distinguishable from an erratic process. We show that the representation of this random process in the experimental time scale is characterized by a surprisingly extended coherence. We show that this model generates a sequence of damped oscillations with a time behavior that is remarkably similar to that derived from the analysis of real EEG's. The main result of this research work is that the existence of crucial events is not incompatible with the alpha wave coherence. In addition to this important result, we find another result that may help our group, or any other research group working on the analysis of brain's dynamics, to prove or to disprove the existence of crucial events. We study the diffusion process generated by fluctuations emerging from the same model after filtering out the alpha coherence, and we study the recursion to the origin. We study the survival probability of this process, namely the probability that up to a given time no recrossing of the origin occurs. We find that this is an inverse power law with a power that depends on whether or not crucial events exist. digital.library.unt.edu/ark:/67531/metadc28389/
 Growth and Characterization of βIron Disilicide, βIron Silicon Germanide, and Osmium Silicides
 The semiconducting silicides offer significant potential for use in optoelectronic devices. Full implementation of the materials, however, requires the ability to tailor the energy gap and band structure to permit the synthesis of heterojunctions. One promising approach is to alloy the silicides with Ge. As part of an investigation into the synthesis of semiconducting silicide heterostructures, a series of βFe(Si1−xGex)2 epilayer samples, with nominal alloy content in the range 0 < x < 0.15, have been prepared by molecular beam epitaxy on Si(100). I present results of the epitaxial and crystalline quality of the films, as determined by reflection highenergy electron diffraction, Rutherford backscattering spectroscopy, and double crystal xray diffraction, and of the band gap dependence on the alloy composition, as determined by Fourier transform infrared spectroscopy. A reduction in band gap was observed with increasing Ge content, in agreement with previous theoretical predictions. However Ge segregation was also observed in βFe(Si1−xGex)2 epilayers when x > 0.04. Osmium silicide films have been grown by molecular beam epitaxy on Si(100). The silicides have been grown using ebeam evaporation sources for both Os and Si onto Si(100) substrates at varying growth rates and temperatures ranging from 600700ºC. The resulting films have been analyzed using reflection highenergy electron diffraction, Raman spectroscopy, reflectivity measurements, inplane and out of plane Xray diffraction and temperature dependent magnetotransport. A change in crystalline quality is observed with an increase in Si overpressure. For a lower silicon to osmium flux ration (JSi/JOs=1.5) both OsSi2 and Os2Si3 occur, whereas with a much larger Si overpressure (JSi/JOs>4), crystalline quality is greatly increased and only a single phase, Os2Si3, is present. The outofplane Xray diffraction data show that the film grows along its [4 0 2] direction, with a good crystal quality as evidenced by the small FWHM in the rocking curve. The inplane Xray diffraction data show growth twins with perpendicular orientation to each other. digital.library.unt.edu/ark:/67531/metadc12107/
 Nonlinear UV Laser Buildup Cavity: An Efficient Design
 Using the concept of the buildup cavity for second harmonic generation to produce 243nm laser light, an innovative cavity is theoretically explored using a 15mm length CLBO crystal. In order to limit the losses of the cavity, the number of effective optical surfaces is kept to only four and the use of a MgF2 crystal is adopted to separate the harmonic and fundamental laser beam from each other. The cavity is shown to have an expected round trip loss of five tenths of a percent or better, resulting in a conversion efficiency greater than 65%. digital.library.unt.edu/ark:/67531/metadc9833/
 Exploration of hierarchical leadership and connectivity in neural networks in vitro.
 Living neural networks are capable of processing information much faster than a modern computer, despite running at significantly lower clock speeds. Therefore, understanding the mechanisms neural networks utilize is an issue of substantial importance. Neuronal interaction dynamics were studied using histiotypic networks growing on microelectrode arrays in vitro. Hierarchical relationships were explored using bursting (when many neurons fire in a short time frame) dynamics, pairwise neuronal activation, and information theoretic measures. Together, these methods reveal that global network activity results from ignition by a small group of burst leader neurons, which form a primary circuit that is responsible for initiating most networkwide burst events. Phase delays between leaders and followers reveal information about the nature of the connection between the two. Physical distance from a burst leader appears to be an important factor in follower response dynamics. Information theory reveals that mutual information between neuronal pairs is also a function of physical distance. Activation relationships in developing networks were studied and plating density was found to play an important role in network connectivity development. These measures provide unique views of network connectivity and hierarchical relationship in vitro which should be included in biologically meaningful models of neural networks. digital.library.unt.edu/ark:/67531/metadc9775/
 The Nonadditive Generalization of Klimontovich's STheorem for Open Systems and Boltzmann's Orthodes
 We show that the nonadditive open systems can be studied in a consistent manner by using a generalized version of Stheorem. This new generalized Stheorem can further be considered as an indication of selforganization in nonadditive open systems as prescribed by Haken. The nonadditive Stheorem is then illustrated by using the modified Van der Pol oscillator. Finally, Tsallis entropy as an equilibrium entropy is studied by using Boltzmann's method of orthodes. This part of dissertation shows that Tsallis ensemble is on equal footing with the microcanonical, canonical and grand canonical ensembles. However, the associated entropy turns out to be Renyi entropy. digital.library.unt.edu/ark:/67531/metadc9124/
 Oligonucleotide guanosine conjugated to gallium nitride nanostructures for photonics.
 In this work, I studied the hybrid system based on selfassembled guanosine crystal (SAGC) conjugated to widebandgap semiconductor gallium nitride (GaN). Guanosine is one of the four bases of DNA and has the lowest oxidation energy, which favors carrier transport. It also has large dipole moment. Guanosine molecules selfassemble to ribbonlike structure in confined space. GaN surface can have positive or negative polarity depending on whether the surface is Ga or Nterminated. I studied SAGC in confined space between two electrodes. The currentvoltage characteristics can be explained very well with the theory of metalsemiconductormetal (MSM) structure. IV curves also show strong rectification effect, which can be explained by the intrinsic polarization along the axis of ribbonlike structure of SAGC. GaN substrate property influences the properties of SAGC. So SAGC has semiconductor properties within the confined space up to 458nm. When the gap distance gets up to 484nm, the structure with guanosine shows resistance characteristics. The photocurrent measurements show that the bandgap of SAGC is about 3.33.4eV and affected by substrate properties. The MSM structure based on SAGC can be used as photodetector in UV region. Then I show that the periodic structure based on GaN and SAGC can have photonic bandgaps. The bandgap size and the band edges can be tuned by tuning lattice parameters. Light propagation and emission can be tuned by photonic crystals. So the hybrid photonic crystal can be potentially used to detect guanosine molecules. If guanosine molecules are used as functional linker to other biomolecules which usually absorb or emit light in blue to UV region, the hybrid photonic crystal can also be used to tune the coupling of light source to guanosine molecules, then to other biomolecules. digital.library.unt.edu/ark:/67531/metadc9065/
 Emergence of Complexity from Synchronization and Cooperation
 The dynamical origin of complexity is an object of intense debate and, up to moment of writing this manuscript, no unified approach exists as to how it should be properly addressed. This research work adopts the perspective of complexity as characterized by the emergence of nonPoisson renewal processes. In particular I introduce two new complex system models, namely the twostate stochastic clocks and the integrateandfire stochastic neurons, and investigate its coupled dynamics in different network topologies. Based on the foundations of renewal theory, I show how complexity, as manifested by the occurrence of nonexponential distribution of events, emerges from the interaction of the units of the system. Conclusion is made on the work's applicability to explaining the dynamics of blinking nanocrystals, neuron interaction in the human brain, and synchronization processes in complex networks. digital.library.unt.edu/ark:/67531/metadc6107/
 Microscopic Foundations of Thermodynamics and Generalized Statistical Ensembles
 This dissertation aims at addressing two important theoretical questions which are still debated in the statistical mechanical community. The first question has to do with the outstanding problem of how to reconcile timereversal asymmetric macroscopic laws with the timereversal symmetric laws of microscopic dynamics. This problem is addressed by developing a novel mechanical approach inspired by the work of Helmholtz on monocyclic systems and the Heat Theorem, i.e., the Helmholtz Theorem. By following a line of investigation initiated by Boltzmann, a Generalized Helmholtz Theorem is stated and proved. This theorem provides us with a good microscopic analogue of thermodynamic entropy. This is the volume entropy, namely the logarithm of the volume of phase space enclosed by the constant energy hypersurface. By using quantum mechanics only, it is shown that such entropy can only increase. This can be seen as a novel rigorous proof of the Second Law of Thermodynamics that sheds new light onto the arrow of time problem. The volume entropy behaves in a thermodynamiclike way independent of the number of degrees of freedom of the system, indicating that a whole thermodynamiclike world exists at the microscopic level. It is also shown that breaking of ergodicity leads to microcanonical phase transitions associated with nonanalyticities of volume entropy. The second part of the dissertation deals with the problem of the foundations of generalized ensembles in statistical mechanics. The starting point is Boltzmann's work on statistical ensembles and its relation with the Heat Theorem. We first focus on the nonextensive thermostatistics of Tsallis and the associated deformed exponential ensembles. These ensembles are analyzed in detail and proved (a) to comply with the requirements posed by the Heat Theorem, and (b) to interpolate between canonical and microcanonical ensembles. Further they are showed to describe finite systems in contact with finite heat baths. Their mechanical and informationtheoretic foundation, are highlighted. Finally, a wide class of generalized ensembles is introduced, all of which reproduce the Heat Theorem. This class, named the class of dual orthodes, contains microcanonical, canonical, Tsallis and Gaussian ensembles as special cases. digital.library.unt.edu/ark:/67531/metadc6128/
 Multifunctional OrganicInorganic Hybrid Nanophotonic Devices
 The emergence of optical applications, such as lasers, fiber optics, and semiconductor based sources and detectors, has created a drive for smaller and more specialized devices. Nanophotonics is an emerging field of study that encompasses the disciplines of physics, engineering, chemistry, biology, applied sciences and biomedical technology. In particular, nanophotonics explores optical processes on a nanoscale. This dissertation presents nanophotonic applications that incorporate various forms of the organic polymer Nisopropylacrylamide (NIPA) with inorganic semiconductors. This includes the material characterization of NIPA, with such techniques as ellipsometry and dynamic light scattering. Two devices were constructed incorporating the NIPA hydrogel with semiconductors. The first device comprises a PNIPAMCdTe hybrid material. The PNIPAM is a means for the control of distances between CdTe quantum dots encapsulated within the hydrogel. Controlling the distance between the quantum dots allows for the control of resonant energy transfer between neighboring quantum dots. Whereby, providing a means for controlling the temperature dependent redshifts in photoluminescent peaks and FWHM. Further, enhancement of photoluminescent due to increased scattering in the medium is shown as a function of temperature. The second device incorporates NIPA into a 2D photonic crystal patterned on GaAs. The refractive index change of the NIPA hydrogel as it undergoes its phase change creates a controllable mechanism for adjusting the transmittance of light frequencies through a linear defect in a photonic crystal. The NIPA infiltrated photonic crystal shows greater shifts in the bandwidth per ºC than any liquid crystal methods. This dissertation demonstrates the versatile uses of hydrogel, as a means of control in nanophotonic devices, and will likely lead to development of other hybrid applications. The development of smaller light based applications will facilitate the need to augment the devices with control mechanism and will play an increasing important role in the future. digital.library.unt.edu/ark:/67531/metadc6108/
 Perturbation of renewal processes
 Renewal theory began development in the early 1940s, as the need for it in the industrial engineering subdiscipline operations research had risen. In time, the theory found applications in many stochastic processes. In this thesis I investigated the effect of seasonal effects on Poisson and nonPoisson renewal processes in the form of perturbations. It was determined that the statistical analysis methods developed at UNT Center for Nonlinear Science can be used to detect the effects of seasonality on the data obtained from Poisson/nonPoisson renewal systems. It is proved that a perturbed Poisson process can serve as a paradigmatic model for a case where seasonality is correlated to the noise and that diffusion entropy method can be utilized in revealing this relation. A renewal model making a connection with the stochastic resonance phenomena is used to analyze a previous neurological experiment, and it was shown that under the effect of a nonlinear perturbation, a nonPoisson system statistics may make a transition and end up in the of Poisson basin of statistics. I determine that nonlinear perturbation of the power index for a complex system will lead to a change in the complexity characteristics of the system, i.e., the system will reach a new form of complexity. digital.library.unt.edu/ark:/67531/metadc6140/
 Anderson Localization in TwoChannel Wires with Correlated Disorder: DNA as an Application
 This research studied the Anderson localization of electrons in twochannel wires with correlated disorder and in DNA molecules. It involved an analytical calculation part where the formula for the inverse localization length for electron states in a twochannel wire is derived. It also involved a computational part where the localization length is calculated for some DNA molecules. Electron localization in twochannel wires with correlated disorder was studied using a singleelectron tightbinding model. Calculations were within secondorder Bornapproximation to secondorder in disorder parameters. An analytical expression for localization length as a functional of correlations in potentials was found. Anderson localization in DNA molecules were studied in singlechannel wire and twochannel models for electron transport in DNA. In both of the models, some DNA sequences exhibited delocalized electron states in their energy spectrum. Studies with twochannel wire model for DNA yielded important link between electron localization properties and genetic information. digital.library.unt.edu/ark:/67531/metadc5204/
 Computational studies of selected ruthenium catalysis reactions.
 Computational techniques were employed to investigate pathways that would improve the properties and characteristics of transition metal (i.e., ruthenium) catalysts, and to explore their mechanisms. The studied catalytic pathways are particularly relevant to catalytic hydroarylation of olefins. These processes involved the +2 to +3 oxidation of ruthenium and its effect on rutheniumcarbon bond strengths, carbonhydrogen bond activation by 1,2addition/reductive elimination pathways appropriate to catalytic hydrogen/deuterium exchange, and the possible intermediacy of highly coordinatively unsaturated (e.g., 14electron) ruthenium complexes in catalysis. The calculations indicate a significant decrease in the RuCH3 homolytic bond dissociation enthalpy for the oxidation of TpRu(CO)(NCMe)(Me) to its RuIII cation through both reactant destabilization and product stabilization. This oxidation can thus lead to the olefin polymerization observed by Gunnoe and coworkers, since weak RuIIIC bonds would afford quick access to alkyl radical species. Calculations support the experimental proposal of a mechanism for catalytic hydrogen/deuterium exchange by a RuIIOH catalyst. Furthermore, calculational investigations reveal a probable pathway for the activation of CH bonds that involves phosphine loss, 1,2addition to the RuOH bond and then reversal of these steps with deuterium to incorporate it into the substrate. The presented results offer the indication for the net addition of aromatic CH bonds across a RuIIOH bond in a process that although thermodynamically unfavorable is kinetically accessible. Calculations support experimental proposals as to the possibility of binding of weakly coordinating ligands such as dinitrogen, methylene chloride and fluorobenzene to the "14electron" complex [(PCP)Ru(CO)]+ in preference to the formation of agostic RuHC interactions. Reactions of [(PCP)Ru(CO)(1ClCH2Cl)][BAr'4] with N2CHPh or phenylacetylene yielded conversions that are exothermic to both terminal carbenes and vinylidenes, respectively, and then bridging isomers of these by CC bond formation resulting from insertion into the RuCipso bond of the phenyl ring of PCP. The QM/MM and DFT calculations on full complexes [(PCP)(CO)Ru=(C)0,1=CHPh]+ and on small models [(PCP')(CO)Ru=(C)0,1=CH2]+, respectively, offered data supportive of the thermodynamic feasibility of the suggested experimental mechanisms and their proposed intermediates. digital.library.unt.edu/ark:/67531/metadc5203/
 Neutron Transmutation and Hydrogenation Study of Hg₁₋xCdxTe
 Anomalous Hall behavior of HgCdTe refers to a "double crossover" feature of the Hall coefficient in ptype material, or a peak in the Hall mobility or Hall coefficient in ntype material. A magnetoconductivity tensor approach was utilized to identify presence of two electrons contributing to the conduction as well as transport properties of each electron in the material. The two electron model for the mobility shows that the anomalous Hall behavior results from the competition of two electrons, one in the energy gap graded region near the CdZnTe/HgCdTe interface with large band gap and the other in the bulk of the LPE film with narrow band gap. Hg0.78Cd0.22Te samples grown by LPE on CdZnTe(111B)oriented substrates were exposed to various doses of thermal neutrons (~1.7 x 1016  1.25 x 1017 /cm2) and subsequently annealed at ~220oC for ~24h in Hg saturated vapor to recover damage and reduce the presence of Hg vacancies. Extensive Magnetotransport measurements were performed on these samples. SIMS profile for impurities produced by neutron irradiation was also obtained. The purpose for this study is to investigate the influence of neutron irradiation on this material as a basis for further study on HgCdTe74Se. The result shows that total mobility is observed to decrease with increased neutron dose and can be fitted by including a mobility inverse proportional to neutron dose. Electron introduction rate of thermal neutron is much smaller than that of fission neutrons. Total recovering of the material is suggested to have longer time annealing. Using Kane's model, we also fitted carrier concentration change at low temperature by introducing a donor level with activation energy changing with temperature. Results on Se diffusion in liquid phase epitaxy (LPE) grown HgCdTe epilayers is reported. The LPE Hg0.78Cd0.22Te samples were implanted with Se of 2.0×1014/cm2 at 100keV and annealed at 350450oC in mercury saturated vapor. Secondary ions mass spectrometry (SIMS) profiles were obtained for each sample. From a Gaussian fit we find that the Se diffusion coefficient DSe is about one to two orders of magnitude smaller than that of arsenic. The asimplanted Se distribution is taken into account in case of small diffusion length in Gaussian fitting. Assuming a Te vacancy based mechanism, the Arrhenius relationship yields an activation energy 1.84eV. Dislocations introduced in HgCdTe materials result in two energy levels, where one is a donor and one is an acceptor. Hydrogenation treatment can effectively neutralize these dislocation defect levels. Both experimental results and theoretical calculation show that the mobility due to dislocation scattering remains constant in the low temperature range (<77K), and increases with temperature between 77K and 150K. Dislocation scattering has little effect on electrical transport properties of HgCdTe with an EPD lower than 107/cm2. Dislocations may have little effect on carrier concentration for semiconductor material with zinc blende structure due to self compensation. digital.library.unt.edu/ark:/67531/metadc9126/
 A Novel Process for GeSi Thin Film Synthesis
 A unique process of fabricating a strained layer GexSi1x on insulator is demonstrated. Such strained heterostructures are useful in the fabrication of highmobility transistors. This technique incorporates wellestablished silicon processing technology e.g., ion implantation and thermal oxidation. A dilute GeSi layer is initially formed by implanting Ge+ into a silicononinsulator (SOI) substrate. Thermal oxidation segregates the Ge at the growing oxide interface to form a distinct GexSi1x thinfilm with a composition that can be tailored by controlling the oxidation parameters (e.g. temperature and oxidation ambient). In addition, the film thickness can be controlled by implantation fluence, which is important since the film forms pseudomorphically below 2×1016 Ge/cm2. Continued oxidation consumes the underlying Si leaving the strained GeSi film encapsulated by the two oxide layers, i.e. the top thermal oxide and the buried oxide. Removal of the thermal oxide by a dilute HF etch completes the process. Strain relaxation can be achieved by either of two methods. One involves vacancy injection by ion implantation to introduce sufficient openvolume within the film to compensate for the compressive strain. The other depends upon the formation of GeO2. If Ge is oxidized in the absence of Si, it evaporates as GeO(g) resulting in spontaneous relaxation within the strained film. Conditions under which this occurs have been discussed along with elaborated results of oxidation kinetics of Geion implanted silicon. Rutherford backscattering spectrometry (RBS), ion channeling, Raman spectroscopy and scanning electron microscopy (SEM) were used as the characterization techniques. digital.library.unt.edu/ark:/67531/metadc5167/
 Fractional Brownian motion and dynamic approach to complexity.
 The dynamic approach to fractional Brownian motion (FBM) establishes a link between nonPoisson renewal process with abrupt jumps resetting to zero the system's memory and correlated dynamic processes, whose individual trajectories keep a nonvanishing memory of their past time evolution. It is well known that the recrossing times of the origin by an ordinary 1D diffusion trajectory generates a distribution of time distances between two consecutive origin recrossing times with an inverse power law with index m=1.5. However, with theoretical and numerical arguments, it is proved that this is the special case of a more general condition, insofar as the recrossing times produced by the dynamic FBM generates process with m=2H. Later, the model of ballistic deposition is studied, which is as a simple way to establish cooperation among the columns of a growing surface, to show that cooperation generates memory properties and, at same time, nonPoisson renewal events. Finally, the connection between trajectory and density memory is discussed, showing that the trajectory memory does not necessarily yields density memory, and density memory might be compatible with the existence of abrupt jumps resetting to zero the system's memory. digital.library.unt.edu/ark:/67531/metadc3992/
 Studying Interactions of Gas Molecules with Nanomaterials Loaded in a Microwave Resonant Cavity
 A resonant cavity operating in TE011 mode was used to study the adsorption response of single walled carbon nanotubes (SWCNTs) and other nanomaterials for different types of gas molecules. The range of the frequency signal as a probe was chosen as geometry dependent range between 9.1 9.8 GHz. A highly specific range can be studied for further experiments dependent on the type of molecule being investigated. It was found that for different pressures of gases and for different types of nanomaterials, there was a different response in the shifts of the probe signal for each cycle of gassing and degassing of the cavity. This dissertation suggests that microwave spectroscopy of a complex medium of gases and carbon nanotubes can be used as a highly sensitive technique to determine the complex dielectric response of different polar as well as nonpolar gases when subjected to intense electromagnetic fields within the cavity. Also, as part of the experimental work, a range of other microporous materials was tested using the residual gas analysis (RGA) technique to determine their intrinsic absorption/adsorption characteristics when under an ultrahigh vacuum environment. The scientific results obtained from this investigation, led to the development of a chemical biological sensor prototype. The method proposed is to develop operational sensors to detect toxin gases for homeland security applications and also develop sniffers to detect toxin drugs for law enforcement agency personnel. digital.library.unt.edu/ark:/67531/metadc4009/
 Complexity as Aging NonPoisson Renewal Processes
 The search for a satisfactory model for complexity, meant as an intermediate condition between total order and total disorder, is still subject of debate in the scientific community. In this dissertation the emergence of nonPoisson renewal processes in several complex systems is investigated. After reviewing the basics of renewal theory, another popular approach to complexity, called modulation, is introduced. I show how these two different approaches, given a suitable choice of the parameter involved, can generate the same macroscopic outcome, namely an inverse power law distribution density of events occurrence. To solve this ambiguity, a numerical instrument, based on the theoretical analysis of the aging properties of renewal systems, is introduced. The application of this method, called renewal aging experiment, allows us to distinguish if a time series has been generated by a renewal or a modulation process. This method of analysis is then applied to several physical systems, from blinking quantum dots, to the human brain activity, to seismic fluctuations. Theoretical conclusions about the underlying nature of the considered complex systems are drawn. digital.library.unt.edu/ark:/67531/metadc3706/
 Characterization, properties and applications of novel nanostructured hydrogels.

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The characterization, properties and applications of the novel nanostructured microgel (nanoparticle network and microgel crystal) composed of polyNisopropylacrylanmidecoallylamine (PNIPAMcoallylamine) and PNIPAMcoacrylic acid(AA) have been investigated. For the novel nanostructured hydrogels with the two levels of structure: the primary network inside each individual particle and the secondary network of the crosslinked nanoparticles, the new shear modulus, drug release law from hydrogel with heterogeneous structure have been studied. The successful method for calculating the volume fraction related the phase transition of colloid have been obtained. The kinetics of crystallization in an aqueous dispersion of PNIPAM particles has been explored using UVvisible transmission spectroscopy. This dissertation also includes the initial research on the melting behavior of colloidal crystals composed of PNIPAM microgels. Many new findings in this study area have never been reported before. The theoretical model for the columnar crystal growth from the top to bottom of PNIPAM microgel has been built, which explains the growth mechanism of the novel columnar hydrogel colloidal crystals. Since the unique structure of the novel nanostructured hydrogels, their properties are different with the conventional hydrogels and the hardspherelike system. The studies and results in this dissertation have the important significant for theoretical study and valuable application of these novel nanostructured hydrogels. digital.library.unt.edu/ark:/67531/metadc5605/  Investigation of Selected OpticallyActive Nanosystems Fashioned using Ion Implantation
 Optoelectronic semiconductor technology continues to grow at an accelerated pace, as the industry seeks to perfect devices such as light emitting diodes for purposes of optical processing and communication. A strive for greater efficiency with shrinking device dimensions, continually pushes the technology from both a design and materials aspect. Nanosystems such a quantum dots, also face new material engineering challenges as they enter the realm of quantum mechanics, with each system and material having markedly different electronic properties. Traditionally, the semiconductor industry has focused on materials such Group IIVI and IIIV compounds as the basis material for future optoelectronic needs. Unfortunately, these material systems can be expensive and have difficulties integrating into current Sibased technology. The industry is reluctant to leave silicon due in part to silicon's high quality oxide, and the enormous amount of research invested into silicon based circuit fabrication. Although recently materials such as GaN are starting to dominate the electrooptical industry since a Sibased substitute has not been found. The purpose of the dissertation was to examine several promising systems that could be easily integrated into current Sibased technology and also be produced using simple inexpensive fabrication techniques such ion implantation. The development of optically active nanosized precipitates in silica to form the active layer of an optoelectronic device was achieved with ion implantation and thermal annealing. Three material systems were investigated. These systems consisted of carbon, silicon and metal silicide based nanocrystals. The physical morphology and electronic properties were monitored using a variety of material characterization techniques. Rutherford backscattering/channeling were used to monitor elemental concentrations, photoluminescence was used to monitor the optoelectronic properties and transmission electron microscopy was used to study the intricate morphology of individual precipitates. The electronic properties and the morphology were studied as a function of implant dose, anneal times and anneal temperatures. digital.library.unt.edu/ark:/67531/metadc5259/
 IonInduced Damage In Si: A Fundamental Study of Basic Mechanisms over a Wide Range of Implantation Conditions
 A new understanding of the damage formation mechanisms in Si is developed and investigated over an extended range of ion energy, dose, and irradiation temperature. A simple model for dealing with ioninduced damage is proposed, which is shown to be applicable over the range of implantation conditions. In particular the concept of defect "excesses" will be discussed. An excess exists in the lattice when there is a local surplus of one particular type of defect, such as an interstitial, over its complimentary defect (i.e., a vacancy). Mechanisms for producing such excesses by implantation will be discussed. The basis of this model specifies that accumulation of stable lattice damage during implantation depends upon the excess defects and not the total number of defects. The excess defect model is validated by fundamental damage studies involving ion implantation over a range of conditions. Confirmation of the model is provided by comparing damage profiles after implantation with computer simulation results. It will be shown that transport of ions in matter (TRIM) can be used effectively to model the ioninduced damage profile, i.e. excess defect distributions, by a simple subtraction process in which the spatially correlated defects are removed, thereby simulating recombination. Classic defect studies illuminate defect interactions from concomitant implantation of high and mediumenergy Si+self ions. Also, the predictive quality of the excess defect model was tested by applying the model to develop several experiments to engineer excess defect concentrations to substantially change the nature and distribution of the defects. Not only are the excess defects shown to play a dominant role in defectrelated processing issues, but their manipulation is demonstrated to be a powerful tool in tailoring the implantation process to achieve design goals. Preamorphization and dual implantation of different energetic ions are two primary investigative tools used in this work. Various analyses, including XTEM, RBS/channeling, PAS, and SIMS, provided experimental verification of the excess defect model disseminated within this dissertation. digital.library.unt.edu/ark:/67531/metadc5248/
 Mechanism and the Effect of MicrowaveCarbon Nanotube Interaction
 A series of experimental results about unusual heating of carbon nanotubes by microwaves is analyzed in this dissertation. Two of vibration types, cantilever type (one end is fixed and the other one end is free), the second type is both ends are fixed, have been studied by other people. A third type of forced vibration of carbon nanotubes under an alternating electromagnetic field is examined in this paper. Heating of carbon nanotubes (CNTs) by microwaves is described in terms of nonlinear dynamics of a vibrating nanotube. Results from the model provide a way to understand several observations that have been made. It is shown that transverse vibrations of CNTs during microwave irradiation can be attributed to transverse parametric resonance, as occurs in the analysis of Melde's experiment on forced longitudinal vibrations of a stretched elastic string. For many kinds of carbon nanotubes (SWNT, DWNT, MWNT, ropes and strands) the resonant parameters are found to be located in an unstable region of the parameter space of Mathieu's equation. Third order wave equations are used to qualitatively describe the effects of phononphonon interactions and energy transfer from microwaves to CNTs. This result provides another way to input energy from microwaves to carbon nanotubes besides the usual Joule heating via electronphonon interaction. This model appears to be the first to point out the role of nonlinear dynamics in the heating of CNTs by microwaves. digital.library.unt.edu/ark:/67531/metadc4919/
 Chaos and Momentum Diffusion of the Classical and Quantum Kicked Rotor
 The de BroglieBohm (BB) approach to quantum mechanics gives trajectories similar to classical trajectories except that they are also determined by a quantum potential. The quantum potential is a "fictitious potential" in the sense that it is part of the quantum kinetic energy. We use quantum trajectories to treat quantum chaos in a manner similar to classical chaos. For the kicked rotor, which is a bounded system, we use the Benettin et al. method to calculate both classical and quantum Lyapunov exponents as a function of control parameter K and find chaos in both cases. Within the chaotic sea we find in both cases nonchaotic stability regions for K equal to multiples of π. For even multiples of π the stability regions are associated with classical accelerator mode islands and for odd multiples of π they are associated with new oscillator modes. We examine the structure of these regions. Momentum diffusion of the quantum kicked rotor is studied with both BB and standard quantum mechanics (SQM). A general analytical expression is given for the momentum diffusion at quantum resonance of both BB and SQM. We obtain agreement between the two approaches in numerical experiments. For the case of nonresonance the quantum potential is not zero and must be included as part of the quantum kinetic energy for agreement. The numerical data for momentum diffusion of classical kicked rotor is well fit by a power law DNβ in the number of kicks N. In the anomalous momentum diffusion regions due to accelerator modes the exponent β(K) is slightly less than quadratic, except for a slight dip, in agreement with an upper bound (K2/2)N2. The corresponding coefficient D(K) in these regions has three distinct sections, most likely due to accelerator modes with period greater than one. We also show that the local Lyapunov exponent of the classical kicked rotor has a plateau for a duration that depends on the initial separation and then decreases asymptotically as O(t1lnt), where t is the time. This behavior is consistent with an upper bound that is determined analytically. digital.library.unt.edu/ark:/67531/metadc4824/
 Decoherence, Master Equation for Open Quantum Systems, and the Subordination Theory
 This thesis addresses the problem of a form of anomalous decoherence that sheds light into the spectroscopy of blinking quantum dots. The system studied is a twostate system, interacting with an external environment that has the effect of establishing an interaction between the two states, via a coherence generating coupling, called inphasing. The collisions with the environment produce also decoherence, named dephasing. Decoherence is interpreted as the entanglement of the coherent superposition of these two states with the environment. The joint action of inphasing and dephasing generates a Markov master equation statistically equivalent to a random walker jumping from one state to the other. This model can be used to describe intermittent fluorescence, as a sequence of "light on" and "light off" states. The experiments on blinking quantum dots indicate that the sojourn times are distributed with an inverse power law. Thus, a proposal to turn the model for Poisson fluorescence intermittency into a model for nonPoisson fluorescence intermittency is made. The collisionlike interaction of the twostate system with the environment is assumed to takes place at random times rather than at regular times. The time distance between one collision and the next is given by a distribution, called the subordination distribution. If the subordination distribution is exponential, a sequence of collisions yielding no persistence is turned into a sequence of "light on" and "light off" states with significant persistence. If the subordination function is an inverse power law the sequel of "light on" and "light off" states becomes equivalent to the experimental sequences. Different conditions are considered, ranging from predominant inphasing to predominant dephasing. When dephasing is predominant the sequel of "light on" and "light off" states in the time asymptotic limit becomes an inverse power law. If the predominant dephasing involves a time scale much larger than the minimum time scale accessible to the experimental observation, thereby generating persistence, the resulting distribution becomes a MittagLeffler function. If dephasing is predominant, in addition to the inverse power law distribution of "light off" and "light on" time duration, a strong correlation between "light on" and "light off" state is predicted. digital.library.unt.edu/ark:/67531/metadc4812/
 Brownian Movement and Quantum Computers

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This problem in lieu of thesis is a discussion of two topics: Brownian movement and quantum computers. Brownian movement is a physical phenomenon in which the particle velocity is constantly undergoing random fluctuations. Chapters 2, 3 and 4, describe Brownian motion from three different perspectives. The next four chapters are devoted to the subject of quantum computers, which are the signal of a new era of technology and science combined together. In the first chapter I present to a reader the two topics of my problem in lieu of thesis. In the second chapter I explain the idea of Brownian motion, its interpretation as a stochastic process and I find its distribution function. The next chapter illustrates the probabilistic picture of Brownian motion, where the statistical averages over trajectories are related to the probability distribution function. Chapter 4 shows how to derive the Langevin equation, introduced in chapter 1, using a Hamiltonian picture of a bath with infinite number of harmonic oscillators. The chapter 5 explains how the idea of quantum computers was developed and how stepbystep all the puzzles for the field of quantum computers were created. The next chapter, chapter 6, discus the basic quantum unit of information namely, the so called qubit and its properties. Chapter 7 is devoted to quantum logic gates, which are important for conducting logic operation in quantum computers. This chapter explains how they were developed and how they are different from classical ones. Chapter 8 is about the quantum algorithm, Shor's algorithm. Quantum algorithm in quantum computers enables one to solve problems that are hard to solve on digital computers. The last chapter contains conclusions on Brownian movement and the field of quantum computers. digital.library.unt.edu/ark:/67531/metadc4660/  NonPoissonian statistics, aging and "blinking'" quantum dots.
 This dissertation addresses the delicate problem of aging in complex systems characterized by nonPoissonian statistics. With reference to a generic twostates system interacting with a bath it is shown that to properly describe the evolution of such a system within the formalism of the continuous time random walk (CTRW), it has to be taken into account that, if the system is prepared at time t=0 and the observation of the system starts at a later time ta>0, the distribution of the first sojourn times in each of the two states depends on ta, the age of the system. It is shown that this aging property in the fractional derivative formalism forces to introduce a fractional index depending on time. It is shown also that, when a stationary condition exists, the Onsager regression principle is fulfilled only if the system is aged and consequently if an infinitely aged distribution for the first sojourn times is adopted in the CTRW formalism used to describe the system itself. This dissertation, as final result, shows how to extend to the nonPoisson case the Kubo Anderson (KA) lineshape theory, so as to turn it into a theoretical tool adequate to describe the time evolution of the absorption and emission spectra of CdSe quantum dots. The fluorescence emission of these single nanocrystals exhibits interesting intermittent behavior, namely, a sequence of "light on" and "light off" states, departing from Poisson statistics. Taking aging into account an exact analytical treatment is derived to calculate the spectrum. In the regime fitting experimental data this final result implies that the spectrum of the "blinking" quantum dots must age forever. digital.library.unt.edu/ark:/67531/metadc4555/
 Random growth of interfaces: Statistical analysis of single columns and detection of critical events.

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The dynamics of growth and formation of surfaces and interfaces is becoming very important for the understanding of the origin and the behavior of a wide range of natural and industrial dynamical processes. The first part of the paper is focused on the interesting field of the random growth of surfaces and interfaces, which finds application in physics, geology, biology, economics, and engineering among others. In this part it is studied the random growth of surfaces from within the perspective of a single column, namely, the fluctuation of the column height around the mean value, which is depicted as being subordinated to a standard fluctuationdissipation process with friction g. It is argued that the main properties of KardarParisiZhang theory are derived by identifying the distribution of return times to y(0) = 0, which is a truncated inverse power law, with the distribution of subordination times. The agreement of the theoretical prediction with the numerical treatment of the model of ballistic deposition is remarkably good, in spite of the finite size effects affecting this model. The second part of the paper deals with the efficiency of the diffusion entropy analysis (DEA) when applied to the studies of stromatolites. In this case it is shown that this tool can be confidently used for the detection of complexity. The connection between the two studies is established by the use of the DEA itself. In fact, in both analyses, that is, the random growth of interfaces and the study of stromatolites, the method of diffusion entropy is able to detect the real scaling of the system, namely, the scaling of the process is determined by genuinely random events, also called critical events. digital.library.unt.edu/ark:/67531/metadc4550/  Surface Segregation in Multicomponent Systems: Modeling Binary NiAl Alloys Using the BFS Method
 Although the study of surface segregation has a great technological importance, the work done in the field was for a long time largely restricted to experimental studies and the theoretical work was neglected. However, recent improvements in both first principles and semiempirical methods are opening a new era for surface scientists. A method developed by Bozzolo, Ferrante, and Smith (BFS) is particularly suitable for complex systems and several aspects of the computational modeling of surfaces and segregation, including alloy surface segregation, structure and composition of alloy surfaces and the formation of surface alloys. In the following work I introduce the BFS method and apply it to model the NiAl alloy through a MonteCarlo simulation. A comparison between my results and those results published by the group mentioned above was my goal. This thesis also includes a detailed explanation of the application of the BFS method to surfaces of multicomponent metallic systems, beyond binary alloys. digital.library.unt.edu/ark:/67531/metadc4599/
 Carbon nanotube/microwave interactions and applications to hydrogen fuel cells.

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One of the leading problems that will be carried into the 21st century is that of alternative fuels to get our planet away from the consumption of fossil fuels. There has been a growing interest in the use of nanotechnology to somehow aid in this progression. There are several unanswered questions in how to do this. It is known that carbon nanotubes will store hydrogen but it is unclear how to increase that storage capacity and how to remove this hydrogen fuel once stored. This document offers some answers to these questions. It is possible to implant more hydrogen in a nanotube sample using a technique of ion implantation at energy levels ~50keV and below. This, accompanied with the rapid removal of that stored hydrogen through the application of a microwave field, proves to be one promising avenue to solve these two unanswered questions. digital.library.unt.edu/ark:/67531/metadc5796/  The Concept of Collision Strength and Its Applications
 Collision strength, the measure of strength for a binary collision, hasn't been defined clearly. In practice, many physical arguments have been employed for the purpose and taken for granted. A scattering angle has been widely and intensively used as a measure of collision strength in plasma physics for years. The result of this is complication and unnecessary approximation in deriving some of the basic kinetic equations and in calculating some of the basic physical terms. The Boltzmann equation has a fivefold integral collision term that is complicated. Chandrasekhar and Spitzer's approaches to the linear FokkerPlanck coefficients have several approximations. An effective variablechange technique has been developed in this dissertation as an alternative to scattering angle as the measure of collision strength. By introducing the square of the reduced impulse or its equivalencies as a collision strength variable, many plasma calculations have been simplified. The fivefold linear Boltzmann collision integral and linearized Boltzmann collision integral are simplified to threefold integrals. The arbitrary order linear FokkerPlanck coefficients are calculated and expressed in a uniform expression. The new theory provides a simple and exact method for describing the equilibrium plasma collision rate, and a precise calculation of the equilibrium relaxation time. It generalizes bimolecular collision reaction rate theory to a reaction rate theory for plasmas. A simple formula of high precision with wide temperature range has been developed for electron impact ionization rates for carbon atoms and ions. The universality of the concept of collision strength is emphasized. This dissertation will show how Arrhenius' chemical reaction rate theory and Thomson's ionization theory can be unified as one single theory under the concept of collision strength, and how many important physical terms in different disciplines, such as activation energy in chemical reaction theory, ionization energy in Thomson's ionization theory, and the Coulomb logarithm in plasma physics, can be unified into a single one  the threshold value of collision strength. The collision strength, which is a measure of a transfer of momentum in units of energy, can be used to reconcile the differences between Descartes' opinion and Leibnitz's opinion about the "true'' measure of a force. Like Newton's second law, which provides an instantaneous measure of a force, collision strength, as a cumulative measure of a force, can be regarded as part of a law of force in general. digital.library.unt.edu/ark:/67531/metadc4530/
 Maxwell's Equations from Electrostatics and Einstein's Gravitational Field Equation from Newton's Universal Law of Gravitation Using Tensors
 Maxwell's equations are obtained from Coulomb's Law using special relativity. For the derivation, tensor analysis is used, charge is assumed to be a conserved scalar, the Lorentz force is assumed to be a pure force, and the principle of superposition is assumed to hold. Einstein's gravitational field equation is obtained from Newton's universal law of gravitation. In order to proceed, the principle of least action for gravity is shown to be equivalent to the maximization of proper time along a geodesic. The conservation of energy and momentum is assumed, which, through the use of the Bianchi identity, results in Einstein's field equation. digital.library.unt.edu/ark:/67531/metadc4532/
 Ballistic deposition: global scaling and local time series.
 Complexity can emerge from extremely simple rules. A paradigmatic example of this is the model of ballistic deposition (BD), a simple model of sedimentary rock growth. In two separate ProbleminLieuof Thesis studies, BD was investigated numerically in (1+1)D on a lattice. Both studies are combined in this document. For problem I, the global interface roughening (IR) process was studied in terms of effective scaling exponents for a generalized BD model. The model used incorporates a tunable parameter B to change the cooperation between aggregating particles. Scaling was found to depart increasingly from the predictions of KardarParisiZhang theory both with decreasing system sizes and with increasing cooperation. For problem II, the local single column evolution during BD rock growth was studied via statistical analysis of time series. Connections were found between single column time series properties and the global IR process. digital.library.unt.edu/ark:/67531/metadc4392/
 Polymer Gels: Kinetics, Dynamics Studies and Their Applications as Biomaterials
 The polymer gels especially hydrogels have a very special structure and useful features such as unusual volume phase transition, compatibility with biological systems, and sensitivity to environmental stimuli (temperature, pH value, electric field, light and more), which lead to many potential applications in physical and biochemical fields. This research includes: (1) the theoretical and experimental studies of polymer gels on swelling kinetics, spinodal decomposition, and solution convection in gel matrix; (2) applications of polymer gels in wound dressing, tissuesimulating optical phantom and gel display. The kinetics of gel swelling has been theoretically analyzed by considering coupled motions of both solvent and polymer network. Analytical solutions of the solvent and the network movement are derived from collective diffusion equations for a long cylindrical and a large disk gel. Kinetics of spinodal decomposition of Nisopropylacrylamide (NIPA) polymer gel is investigated using turbidity and ultrasonic techniques. By probing movement of domains, a possible timedependent gel structure in the spinodal decomposition region is presented. Theoretical studies of solution convection in gel matrix have been done and more analysis on dimensionless parameters is provided. To enhance the drug uptake and release capacity of silicone rubber (SR), NIPA hydrogel particles have been incorporated into a SR membrane. This SR/NIPA composite gel has promising attributes for wound dressing and other uses. Tissuesimulating optical phantom has been synthesized and studied using NIPA solution trapped inside a hydrogel. Polymer gels with engineered surface patterns were implemented. NIPA gel deposited on the surface of an acrylamide gel can be used as responsive gel display. A dynamically measurement technique of local shear modulus and swelling ratio of gel is presented based on an engineered periodic surface pattern as square array. digital.library.unt.edu/ark:/67531/metadc4379/