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  Partner: UNT Libraries
 Department: Department of Biological Sciences
BioInformatics, Phylogenetics, and Aspartate Transcarbamoylase

BioInformatics, Phylogenetics, and Aspartate Transcarbamoylase

Access: Use of this item is restricted to the UNT Community.
Date: August 2000
Creator: Cooke, Patrick Alan
Description: In this research, the necessity of understanding and using bioinformatics is demonstrated using the enzyme aspartate transcarbamoylase (ATCase) as the model enzyme. The first portion of this research focuses on the use of bioinformatics. A partial sequence of the pyrB gene found in Enterococcus faecalis was submitted to GenBank and was analyzed against the contiguous sequence from its own genome project. A BLAST (Basic Local Alignment Search Tool; Atschul, et al., 1990) was performed in order to hypothesize the remaining portion of the gene from the contiguous sequence. This allowed a global comparison to other known aspartate transcarbamoylases (ATCases) and once deduced, a translation of the sequence gave the stop codon and thus the complete sequence of the open reading frame. When this was complete, upstream and downstream primers were designed in order to amplify the gene from genomic DNA. The amplified product was then sequenced and used later in phylogenetic analyses concerning the evolution of ATCase. The second portion of this research involves taking multiple ATCase nucleotide sequences and performing phenetic and phylogenetic analyses of the archaea and eubacter families. From these analyses, ancestral relationships which dictate both structure and function were extrapolated from the data and discussed.
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Biological Nitrogen Fixation in Two Southwestern Reservoirs

Biological Nitrogen Fixation in Two Southwestern Reservoirs

Date: August 1973
Creator: Lawley, Gary G.
Description: This investigation has determined the presence of biological nitrogen fixation in two reservoirs in the southwestern United States: Lake Arlington and Lake Ray Hubbard. Subsequent tests have gathered baseline data on the effects of various biological, chemical, and physical parameters on in situ nitrogen fixation in these reservoirs. Of specific importance is the relationship between nitrogen fixation arid occasional blooms of blue-green algae which produce such problems as testes and odors in these water-supply impoundments.
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Biology and Energetics of Tropisternus Lateralis Nimbatus (SAY) (Coleoptera: Hydrophilidae) in a Playa on the Southern High Plains of Texas and Aquatic Coleoptera Diversity from Seven Playas on the Southern High Plains of Texas

Biology and Energetics of Tropisternus Lateralis Nimbatus (SAY) (Coleoptera: Hydrophilidae) in a Playa on the Southern High Plains of Texas and Aquatic Coleoptera Diversity from Seven Playas on the Southern High Plains of Texas

Date: December 1997
Creator: Cook, Robert E. (Robert Edward), 1969-
Description: A study of the biology of Tropisternus lateralis, a hydrophilid beetle, was conducted during the flood period of a single playa on the Southern High Plains of Texas from early June 1995 through early September 1995. Mechanism of colonization, tolerance/avoidance to drought, larval density, and secondary production were analyzed. T. lateralis colonized playas from surrounding aquatic habitats and avoided drought through aerial dispersion. Once in the playa, larval density increased over time. Secondary production was 1.31 g/m2/.25 yr. In addition, aquatic Coleoptera diversity was studied in seven playas on the Southern High Plains of Texas. A total of twenty three species were identified from the study region. Nine species not reported in playa literature were identified.
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Bioreactor Landfill Cell Feasibility Study ' Reference to City of Denton Subtitle-D Permit #1590A Landfill

Bioreactor Landfill Cell Feasibility Study ' Reference to City of Denton Subtitle-D Permit #1590A Landfill

Date: May 2002
Creator: Roberts, Elizabeth
Description: The City of Denton Landfill, Permit #1590A, utilizes “Dry-Tomb” techniques for disposal and promotion of municipal solid waste stabilization, as described by the Resource Conservation and Recovery Act (RCRA) prohibition in 40 CFR. Bioreactor research suggests re-circulating leachate increases biodegradation rates and reduces long-term monitoring from fifty years to less than ten years. Current procedures that are followed at Denton's landfill, literature review and the use of the Hydrologic Evaluation of Landfill Performance (HELP) model, suggest that a bioreactor landfill cell is worthy of further research. Re-circulating leachate and augmenting it with additional liquid will increase biodegradation and the need to design and build a landfill gas collection system to capture methane for energy recovery uses.
Contributing Partner: UNT Libraries
Callus Development and Organogenesis in Cultured Explants of Cowpea (Vigna unguiculata (L.) Walp

Callus Development and Organogenesis in Cultured Explants of Cowpea (Vigna unguiculata (L.) Walp

Access: Use of this item is restricted to the UNT Community.
Date: December 2004
Creator: Omwenga, George Isanda
Description: Cowpea, Vigna unguiculata (L.) Walp is an excellent source of protein, vitamins and minerals and a major food crop many parts of Africa. Optimal production levels are hampered by insect pests and diseases. Biotechnological techniques such as tissue culture and genetic engineering can aid in the development of varieties with resistance to insect pests and diseases. The objective of this study was to investigate conditions necessary for the development of a reproducible tissue culture system that can be applied to regenerate transformed cells from culture. The in vitro manipulation of cowpea using Murashige and Skoog (MS) medium, auxins and cytokinins resulted in the formation of callus and rhizogenesis. Calli that were formed were separated into six classes based on color and texture. Yellowish friable callus, yellowish compact, soft yellowish callus and green and white were composed of largely vacuolated cells and were non-regenerative. Friable green callus was the most prevalent callus type and could form of roots in some hormone combinations. Green spots were formed on hard compact green callus. The green spots became nodular, forming root primordia and ultimately giving rise to roots. None of the six calli types gave rise to the formation of shoots. Embryogenic callus was ...
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Carbachol- and ACPD- Induced Phosphoinositide Responses in the Developing Rat Neocortex

Carbachol- and ACPD- Induced Phosphoinositide Responses in the Developing Rat Neocortex

Date: August 2000
Creator: Hartgraves, Morri D.
Description: Signal transduction via the phosphoinositide (PI) second messenger system has key roles in the development and plasticity of the neocortex. The present study localized PI responses to individual cortical layers in slices of developing rat somatosensory cortex. The acetylcholine agonist carbachol and the glutamate agonist trans-1-amino-1,3-cyclopentanedicarboxylic acid (ACPD) were used to stimulate PI turnover. The PI responses were compared to the distribution of the corresponding PI-linked receptors in order to investigate the regional ontogeny of PI coupling to receptors in relation to neural development. The method for assessing PI turnover was modified from Hwang et al. (1990). This method images the PI response autoradiographically through the localizaton of [3H]cytidine that has been incorporated into the membrane-bound intermediate, cytidine diphosphate diacylglycerol. In each age group (postnatal days 4-30), carbachol resulted in more overall labeling than ACPD. For both agonists, the response peaked on postnatal day 10 (P10) and was lowest in the oldest age group. The laminar distribution of the carbachol PI response from P4-P16 corresponded fairly well with the laminar distribution of [3H]quinuclidinyl benzilate binding (Fuchs, 1995). However, in the subplate layer the carbachol response was strong while receptor binding was minimal. The carbachol response decreased after postnatal day 10, ...
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Carbon Flux in Reservoir Sediments

Carbon Flux in Reservoir Sediments

Date: May 1973
Creator: Newton, Charles Eugene
Description: The central objective of the study was to fractionate sedimenting organic materials according to their source (allochthonous or autochthonous) and ultimately to determine the degree of biodegradability of contributions from either source with particular reference to activities at the mud-water interface.
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A Carcinogenic Agent Elaborated by Liver Cells from Lymphosarcoma-Bearing Mice

A Carcinogenic Agent Elaborated by Liver Cells from Lymphosarcoma-Bearing Mice

Date: August 1972
Creator: Blachley, Jon David
Description: Liver cells from lymphosarcoma-bearing DBA/1J mice were shown, by parabiotic culture with normal liver cells from isologous mice, to elaborate an agent which could pass a 25 mu filter and transform the normal cells to a malignant state.
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Cardio-respiratory ontogeny and the transition to bimodal respiration in an air breathing fish, the blue gourami (Trichogaster trichopterus): Morphological and physiological development in normoxia and hypoxia.

Cardio-respiratory ontogeny and the transition to bimodal respiration in an air breathing fish, the blue gourami (Trichogaster trichopterus): Morphological and physiological development in normoxia and hypoxia.

Date: August 2009
Creator: Blank, Tara M.
Description: As selection pressures exist for not only adults, but for every life history stage, it is important to understand how environmental factors shape developing animals. Despite the significance placed on aquatic hypoxia as a driving force in the evolution of air breathing, this is the first known study to examine the effects of hypoxia on cardio-respiratory ontogeny of an air breathing fish. Blue gouramis are obligatory air breathing fish that possess a labyrinth-like structure that serves as the air breathing organ. Gouramis were reared for up to 90 d in normoxia or hypoxia, and morphological and physiological development was observed. Hypoxic larvae had increased lamellar and labyrinth organ surface areas. Bradycardia and increased gill ventilation rates were observed when larvae from either rearing group were briefly exposed to hypoxia. Hypoxic larvae also showed a reduced heart rate and gill ventilation rate in the absence of a hypoxic stimulus, possibly indicative of a more comprehensive, long-term respiratory plasticity. The similarity of routine oxygen consumption between rearing groups suggests that metabolic demand did not change for hypoxic larvae, but that they were more efficient at oxygen acquisition. This is further supported by increased resistance time of hypoxic gouramis to extreme hypoxia. The ...
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Cassette Systems for Creating Intergeneric Hybrid ATCases

Cassette Systems for Creating Intergeneric Hybrid ATCases

Date: December 1999
Creator: Simpson, Luci N.
Description: Cassette systems for creating intergeneric hybrid ATCases were constructed. An MluI restriction enzyme site was introduced at the carbamoylphosphate binding site within the pyrB genes of both Pseudomonas putida and Escherichia coli. Two hybrids, E. coli pyrB polar domain fused with P. putida pyrB equatorial domain and P. putida pyrB polar domain fused with E. coli pyrB equatorial domain, are possible. The intergeneric E. coli-P. putida hybrid pyrB gene was constructed and found to encode an active ATCase which complemented an E. coli Pyr- strain. These hybrids are useful for kinetic and expression studies of ATCase in E. coli.
Contributing Partner: UNT Libraries