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  Partner: UNT College of Arts and Sciences
 Department: Biological Sciences
 Collection: UNT Scholarly Works
Multiple domains in MtENOD8 protein including the signal peptide target it to the symbiosome

Multiple domains in MtENOD8 protein including the signal peptide target it to the symbiosome

Date: May 2012
Creator: Meckfessel, Matthew H.; Blancaflor, Elison B.; Plunkett, Michael; Dong, Qunfeng & Dickstein, Rebecca
Description: This article discusses multiple domains in MtENOD8 protein. The authors' evidence shows that MtENOD8 has evolved redundant targeting sequences for symbiosome targeting and that intracellular localization of ectopically expressed MtENOD8-SP-GFP is useful as a marker for monitoring the extent of development in mutant nodules.
Contributing Partner: UNT College of Arts and Sciences
TableMaker: An ad hoc Query Tool for Relational Databases

TableMaker: An ad hoc Query Tool for Relational Databases

Date: July 2008
Creator: Lushbough, Carol; Duvick, Jon; Dong, Qunfeng; Jennewein, Douglas; Reynoldson, Joe & Brendel, Volker
Description: This paper discusses an ad hoc query tool for relational databases. Most Web servers hosting biological data limit users to a defined set of search options and output formats that are short of the whole range of options available to users with direct database access. However, to make full use of the wealth of data in the database resource, it is desirable to have an intermediate solution that provides a broad range of flexible query and output options through a Web portal.
Contributing Partner: UNT College of Arts and Sciences
Using WebGBrowse to Visualize Genome Annotation on GBrowse

Using WebGBrowse to Visualize Genome Annotation on GBrowse

Date: 2010
Creator: Podicheti, Ram & Dong, Qunfeng
Description: This article discusses using WebGBrowse to visualize genome annotation on GBrowse. Although GBrowse is popular for visualizing genomic features along a reference sequence, its installation and configuration are difficult for many biologists. WebGBrowse is a web server that takes a user-supplied annotation file, guides users to configure the display of each genomic feature, and allows users to visualize the genome annotation with integrated GBrowse software. This protocol guides the user through each step of using WebGBrowse.
Contributing Partner: UNT College of Arts and Sciences
Comparative Plant Genomics Resources at Plant GDB

Comparative Plant Genomics Resources at Plant GDB

Date: October 2005
Creator: Dong, Qunfeng; Lawrence, Carolyn J.; Schlueter, Shannon D.; Wilkerson, Matthew D.; Kurtz, Stefan; Brendel, Volker et al.
Description: Article on comparative plant genomics resources at plant GDB.
Contributing Partner: UNT College of Arts and Sciences
Characteristic Male Urine Microbiomes Associate with Asymptomatic Sexually Transmitted Infection

Characteristic Male Urine Microbiomes Associate with Asymptomatic Sexually Transmitted Infection

Date: November 2010
Creator: Nelson, David E.; Van Der Pol, Barbara; Dong, Qunfeng; Revanna, Kashi V.; Fan, Baochang; Easwaran, Shraddha et al.
Description: This article discusses characteristic male urine microbiomes.
Contributing Partner: UNT College of Arts and Sciences
The Ecoresponsive Genome of Daphnia pulex

The Ecoresponsive Genome of Daphnia pulex

Date: February 4, 2011
Creator: Colbourne, John K.; Pfrender, Michael E.; Gilbert, Donald; Thomas, W. Kelley; Tucker, Abraham; Oakley, Todd H. et al.
Description: This article discusses the ecoresponsive genome of Daphnia pulex.
Contributing Partner: UNT College of Arts and Sciences
The Microbial Communities in Male First Catch Urine Are Highly Similar to Those in Paired Urethral Swab Specimens

The Microbial Communities in Male First Catch Urine Are Highly Similar to Those in Paired Urethral Swab Specimens

Date: May 13, 2011
Creator: Dong, Qunfeng; Nelson, David E.; Toh, Evelyn; Diao, Lixia; Gao, Xiang; Fortenberry, J. Dennis et al.
Description: This article discusses microbial communities for STI testing.
Contributing Partner: UNT College of Arts and Sciences
Functional and Phylogenetic Analyses of a Conserved Regulatory Program in the Phloem of Minor Veins

Functional and Phylogenetic Analyses of a Conserved Regulatory Program in the Phloem of Minor Veins

Date: November 2003
Creator: Ayre, Brian G.; Blair, Jaime E. & Turgeon, Robert
Description: This article discusses functional and phylogenetic analyses of a conserved regulatory program in the phloem of minor veins, which are developmentally and physiologically distinct from the phloem in the rest of the vascular system.
Contributing Partner: UNT College of Arts and Sciences
A cytochrome P450 monooxygenase commonly used for negative selection in transgenic plants causes growth anomalies by disrupting brassinosteroid signaling

A cytochrome P450 monooxygenase commonly used for negative selection in transgenic plants causes growth anomalies by disrupting brassinosteroid signaling

Date: April 15, 2011
Creator: Dasgupta, Kasturi; Ganesan, Savita; Manivasagam, Sindhu & Ayre, Brian G.
Description: This article discusses a cytochrome P450 monooxygenase. This enzyme has various effects on growth substrates, causing negative effects on plant growth.
Contributing Partner: UNT College of Arts and Sciences
WebGBrowse 2.1 - A Web Server Supporting Multiple Versions of the Generic Genome Browser for Customizable Genome Annotation Display

WebGBrowse 2.1 - A Web Server Supporting Multiple Versions of the Generic Genome Browser for Customizable Genome Annotation Display

Date: April 2011
Creator: Podicheti, Ram; Revanna, Kashi V. & Dong, Qunfeng
Description: In this book, the authors discuss WebGBrowse 2.1, one of the most popular genome browsers used by the research community.
Contributing Partner: UNT College of Arts and Sciences