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Underwater with a Hand Lens in the Rivers of Cape Horn, Chile; Ecology, Biocultural Conservation and Education at the Top of the World (55°S) or Zen and communicating aquatic ecology at the Top of the World (55°S)
Date: April 22, 2013
Creator: Kennedy, James H.
Description: This presentation is part of the faculty lecture series UNT Speaks Out on Water Conservation. In this presentation, the author discusses the rivers of Cape Horn, Chile and biocultural conservation and education.
Contributing Partner: UNT College of Arts and Sciences
Permallink:digital.library.unt.edu/ark:/67531/metadc157305/
Water Water Everywhere! but not a drop to drink?
Date: April 22, 2013
Creator: Thompson, Ruthanne
Description: This presentation is part of the faculty lecture series UNT Speaks Out on Water Conservation. In this presentation, the author discusses water conservation and sustainability.
Contributing Partner: UNT College of Arts and Sciences
Permallink:digital.library.unt.edu/ark:/67531/metadc157306/
Comparative Assessment of Peer Review: Project Outcomes Report
Date: January 2013
Creator: Frodeman, Robert; Holbrook, J. Britt; Moen, William E.; Burggren, Warren W. & Mitcham, Carl
Description: This report discusses the Comparative Assessment of Peer Review (CAPR) project outcomes. Public funding agencies are required to demonstrate accountability to their government funders (e.g., Congress) as well as to the public. Some agencies - including the US National Science Foundation (NSF) - have used broader societal impacts criteria as part of the review process of grant proposals in order to connect scientific research to societal needs. But these agencies have often encountered questions from scientists and engineers for how to integrate such demands for broader societal impacts into their research proposals. In an effort to help clarify the idea of broader impacts, in 2010 NSF and Congress proposed a list of national needs that NSF-funded research would be required to meet. But was this the best solution? This report discusses the authors' research.
Contributing Partner: UNT College of Arts and Sciences
Permallink:digital.library.unt.edu/ark:/67531/metadc139466/
Functional Assessment of the Medicago truncatula NIP/LATD Protein Demonstrates That It Is a High-Affinity Nitrate Transporter
Date: October 2012
Creator: Bagchi, Rammyani; Salehin, Mohammad; Adeyemo, O. Sarah; Salazar, Carolina; Shulaev, Vladimir; Sherrier, D. Janine et al
Description: This article discusses a functional assessment of the Medicago truncatula NIP/LATD. Abstract: The Medicago truncatula NIP/LATD (for Numerous Infections and Polyphenolics/Lateral root-organ Defective) gene encodes a protein found in a clade of nitrate transporters within the large NRT1(PTR) family that also encodes transporters of dipeptides and tripeptides, dicarboxylates, auxin, and abscisic acid. Of the NRT1(PTR) members known to transport nitrate, most are low-affinity transporters. Here, the authors show that M. truncatula nip/latd mutants are more defective in their lateral root responses to nitrate provided at low (250 μм) concentrations than at higher (5mм) concentrations; however, nitrate uptake experiments showed no discernible differences in uptake in the mutants. Heterologous expression experiments showed that MtNIP/LATD encodes a nitrate transporter: expression in Xenopus laevis oocytes conferred upon the oocytes the ability to take up nitrate from the medium, but oocytes expressing the less severe Mtnip-3 allele were proficient in nitrate transport. M. truncatula nip/latd mutants have pleiotropic defects in nodulation and root architecture defects but not for nodulation defects. This suggests that the spectrum of activities inherent in AtNRT1.1 is different from that possessed by MtNIP/LATD, but it could also reflect stability differences of each protein in M. truncatula. Collectively, the data show ...
Contributing Partner: UNT College of Arts and Sciences
Permallink:digital.library.unt.edu/ark:/67531/metadc130185/
A web-based multi-genome synteny viewer for customized data
Date: August 2, 2012
Creator: Revanna, V. Kashi; Munro, Daniel; Gao, Alvin; Chiu, Chi-Chen; Pathak, Anil & Dong, Qunfeng
Description: This article discusses a web-based multi-genome synteny viewer for customized data. Background: Web-based synteny visualization tools are important for sharing data and revealing patterns of complicated genome conservation and rearrangements. Such tools should allow biologists to upload genomic data for their own analysis. This requirement is critical because individual biologists are generating large amounts of genomic sequences that quickly overwhelm any centralized web resources to collect and display all those data. Recently, the authors published a web-based synteny viewer, GSV, which was designed to satisfy the above requirement. However, GSV can only compare two genomes at a given time. Extending the functionality of GSV to visualize multiple genomes is important to meet the increasing demand of the research community. Results: The authors have developed a multi-Genome Synteny Viewer (mGSV). Similar to GSV, mGSV is a web-based tool that allows users to upload their own genomic data files for visualization. Multiple genomes can be presented in a single integrated view with an enhanced user interface. Users can navigate through all selected genomes in either pairwise or multiple viewing mode to examine conserved genomic regions as well as the accompanying genome annotations. Besides serving users who manually interact with the web server, ...
Contributing Partner: UNT College of Arts and Sciences
Permallink:digital.library.unt.edu/ark:/67531/metadc122141/
Derivation of the evolution of empathic other-regarding social emotions as compared to non-social self-regarding emotions
Date: July 16, 2012
Creator: Tam, Nicoladie D.
Description: This article accompanies a poster presentation on the derivation of the evolution of empathic other-regarding social emotions as compared to non-social self-regarding emotions. The present study derives the evolution of social emotions by inclusion of other-regarding concerns from the non-social emotions of self-regarding concerns. Emotional processing is a self-discovered error-correction feedback process in which computations are involved to assess the accuracy of the internal brain-generated predictions with respect to the reality, in order to increase its probability of an organism's own survival.
Contributing Partner: UNT College of Arts and Sciences
Permallink:digital.library.unt.edu/ark:/67531/metadc122156/
Geminivirus-Mediated Delivery of Florigen Promotes Determinate Growth in Aerial Organs and Uncouples Flowering from Photoperiod in Cotton
Date: May 2012
Creator: McGarry, Roisin C. & Ayre, Brian G.
Description: This article discusses geminivirus-mediated delivery of florigen. Abstract: Background: Plant architecture and the timing and distribution of reproductive structures are fundamental agronomic traits shaped by patterns of determinate and indeterminate growth. Florigen, encoded by FLOWERING LOCUS T (FT) in Arabidopsis and SINGLE FLOWER TRUSS (SFT) in tomato, acts as a general growth hormone, advancing determinate growth. Domestication of upland cotton (Gossypium hirsutum) converted it from a lanky photoperiodic perennial to a highly inbred, compact day-neutral plant that is managed as an annual row-crop. This dramatic change in plant architecture provides a unique opportunity to analyze the transition from perennial to annual growth. Methodology/Principle Findings: To explore these architectural changes, the authors addressed the role of day-length upon flowering in an ancestral, perennial accession and in a domesticated variety of cotton. Using a disarmed Cotton leaf crumple virus (CLCrV) as a transient expression system, the authors delivered FT to both cotton accessions. Ectopic expression of FT in ancestral cotton mimicked the effects of day-length, promoting photoperiod-independent flowering, precocious determinate architecture, and lanceolate leaf shape. Domesticated cotton infected with FT demonstrated more synchronized fruiting and enhanced "annualization". Transient expression of FT also facilitated simple crosses between wild photoperiodic and domesticated day-neutral accessions, ...
Contributing Partner: UNT College of Arts and Sciences
Permallink:digital.library.unt.edu/ark:/67531/metadc102285/
Genetic Manipulation of a "Vacuolar" H+ -PPase: From Salt Tolerance to Yield Enhancement under Phosphorus-Deficient Soils
Date: May 2012
Creator: Gaxiola, Roberto A.; Paez-Valencia, Julio; Ayre, Brian G. & Elser, James J.
Description: This article discusses genetic manipulation of a "Vacuolar" H+ -PPase. Abstract: Plant scientists face the difficult challenge of increasing food production without further degradation of the environment. In order to protect drinking water resources and prevent the proliferation of harmful algal blooms and "dead zones" in coastal marine ecosystems, it is imperative to reduce anthropogenic nutrient inputs (Conley et al., 2009). These challenges are further compounded by the goal of utilizing agriculture to provide replacement fuels such as biodiesel and alcohol for our oil-based economy. Phosphate (Pi) is an essential macronutrient required for plant growth and development (Chen et al., 2008). Plant nutrient acquisition and partitioning depend on the H+ gradients generated by the plasma membrane H+ -ATPases (Palmgren, 2001; Fuglsang et al., 2011). In this update, the authors discuss the potential role that the type I H+ -proton- pyrophosphatase (PPase) could play in optimizing Pi use efficiency in plants.
Contributing Partner: UNT College of Arts and Sciences
Permallink:digital.library.unt.edu/ark:/67531/metadc102280/
Multiple domains in MtENOD8 protein including the signal peptide target it to the symbiosome
Date: May 2012
Creator: Meckfessel, Matthew H.; Blancaflor, Elison B.; Plunkett, Michael; Dong, Qunfeng & Dickstein, Rebecca
Description: This article discusses multiple domains in MtENOD8 protein. Abstract: Symbiotic nitrogen fixation occurs in nodules, specialized organs on the roots of legumes. Within nodules, host plant cells are infected with rhizobia that are encapsulated by a plant-derived membrane forming a novel organelle, the symbiosome. In Medicago truncatula, the symbiosome consists of the symbiosome membrane (SymM), a single rhizobium, and the soluble space between them, called the symbiosome space (Syms). The SymS is enriched with plant-derived proteins, including the MtENOD8 protein. Here, the authors present evidence from GFP fusion experiments that the MtENOD8 protein contains at least three symbiosome targeting domains, including its N-terminal signal peptide (SP). When ectopically expressed in non-nodulated root tissue, the MtENOD8 SP delivers GFP to the vacuole. During the course of nodulation, there is a nodule-specific re-direction MtENOD8-SP-GFP from the vacuole to punctate intermediates and subsequently to symbiosomes, with re-direction of MtENOD8-SP-GFP from the vacuole to punctate intermediates preceding intracellular rhizobial infection. Experiments with Medicago mutants having defects in rhizobial infection and symbiosome development demonstrated that the MtNIP/LATD gene is required for re-direction of the MtENOD8-SP-GFP from the vacuoles to punctate intermediates in nodules. The authors' evidence shows that MtENOD8 has evolved redundant targeting sequences for ...
Contributing Partner: UNT College of Arts and Sciences
Permallink:digital.library.unt.edu/ark:/67531/metadc78339/
Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies
Date: April 4, 2012
Creator: Jung, Sook; Cestaro, Alessandro; Troggio, Michela; Main, Dorrie; Zheng, Ping; Cho, Ilhyung et al
Description: This article discusses whole genome comparisons of Fragaria, Prunus and Malus. Background: Rosaceae include numerous economically important and morphologically diverse species. Comparative mapping between the member species in Rosaceae have indicated some level of synteny. Recently the whole genome of three crop species, peach, apple and strawberry, which belong to different genera of the Rosaceae family, have been sequenced, allowing in-depth comparison of these genomes. Results: The authors' analysis using the whole genome sequences of peach, apple and strawberry identified 1399 orthologous regions between the three genomes, with a mean length of around 100 kb. Each peach chromosome showed major orthology mostly to one strawberry chromosome, but to more than two apple chromosomes, suggesting that the apple genome went through more chromosomal fissions in addition to the whole genome duplication after the divergence of the three genera. However, the distribution of contiguous ancestral regions, identified using the multiple genome rearrangements and ancestors (MGRA) algorithm, suggested that the Fragaria genome went through a greater number of small scale rearrangements compared to the other genomes since they diverged from a common ancestor. Using the contiguous ancestral regions, the authors reconstructed a hypothetical ancestral genome for the Rosaceae 7 composed of nine chromosomes ...
Contributing Partner: UNT College of Arts and Sciences
Permallink:digital.library.unt.edu/ark:/67531/metadc122145/