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  Partner: UNT College of Arts and Sciences
 Department: Biological Sciences
 Collection: UNT Scholarly Works
Genome Sequences of Streptomyces Phages Amela and Verse

Genome Sequences of Streptomyces Phages Amela and Verse

Date: February 18, 2016
Creator: Layton, Sonya R.; Hemenway, Ryan M.; Munyoki, Christine M.; Barnes, Emory B.; Barnett, Sierra E.; Bond, Alec M. et al.
Description: This article describes Amela and Verse, two Streptomyces phages isolated by enrichment on Streptomyces venezuelae (ATCC 10712) from two different soil samples.
Contributing Partner: UNT College of Arts and Sciences
Crystal structure of (3E,5E)-3,5-bis[4-(diethylazaniumyl)benzylidene]-1-methyl-4-oxopiperidin-1-ium trichloride dihydrate: a potential biophotonic material

Crystal structure of (3E,5E)-3,5-bis[4-(diethylazaniumyl)benzylidene]-1-methyl-4-oxopiperidin-1-ium trichloride dihydrate: a potential biophotonic material

Date: November 4, 2015
Creator: Nesterov, Volodymyr V.; Zakharov, Lev N.; Nesterov, Vladimir N. & Shulaev, Vladimir
Description: This article describes the crystal structure of the title compound, and examines application as an agent for locating cancer cells with two-photon excited fluorescence as as a potential agent for a photodynamic treatment of cancer. This article includes supporting information with computing details of the study.
Contributing Partner: UNT College of Arts and Sciences
Redefining Agricultural Residues as Bioenergy Feedstocks

Redefining Agricultural Residues as Bioenergy Feedstocks

Date: July 28, 2016
Creator: Caicedo, Marlon; Barros, Jaime & Ordás, Bernardo
Description: This article presents a review of traits relevant to the development of dual purpose varieties is presented with particular emphasis on stover moisture and stay-green.
Contributing Partner: UNT College of Arts and Sciences
Understanding Water-Stress Responses in Soybean Using Hydroponics System - A Systems Biology Perspective

Understanding Water-Stress Responses in Soybean Using Hydroponics System - A Systems Biology Perspective

Date: December 21, 2015
Creator: Tripathi, Prateek; Rabara, Roel C.; Shulaev, Vladimir; Shen, Qingxi J. & Rushton, Paul J.
Description: This article discusses using a system of reduced complexity like hydroponics to identify the potential candidates for water-stress tolerance by plants.
Contributing Partner: UNT College of Arts and Sciences
Deepwater Horizon Oil Spill as a Case Study for Interdisciplinary Cooperation within Developmental Biology, Environmental Sciences and Physiology

Deepwater Horizon Oil Spill as a Case Study for Interdisciplinary Cooperation within Developmental Biology, Environmental Sciences and Physiology

Date: December 17, 2015
Creator: Burggren, Warren W.; Dubansky, Benjamin; Roberts, Aaron & Alloy, Matthew
Description: This article makes the argument for interdisciplinary teams that bring together scientists with different specialties as an efficient way--and perhaps the only way--to unravel highly complex biological effects of marine oil spills.
Contributing Partner: UNT College of Arts and Sciences
Transgenic approaches to altering carbon and nitrogen partitioning in whole plants: assessing the potential to improve crop yields and nutritional quality

Transgenic approaches to altering carbon and nitrogen partitioning in whole plants: assessing the potential to improve crop yields and nutritional quality

Date: April 22, 2015
Creator: Yadav, Umesh P.; Ayre, Brian G. & Bush, Daniel R.
Description: This article summarizes the key transport steps involved in organic carbon and nitrogen compound partitioning, and discusses various transgenic approaches for directly manipulating key carbon and nitrogen transporters involved.
Contributing Partner: UNT College of Arts and Sciences
Commentary: Feedback stabilizes propagation of synchronous spiking in cortical neural networks

Commentary: Feedback stabilizes propagation of synchronous spiking in cortical neural networks

Date: June 10, 2015
Creator: Claverol-Tinturé, Enric & Gross, Guenter W.
Description: This article provides a commentary on the article "Feedback stabilizes propagation of synchronous spiking in cortical neural networks" by Moldakarimov, S., Bazhenov, M., and Sejnowski, T.J.
Contributing Partner: UNT College of Arts and Sciences
Localization of polyhydroxybutyrate in sugarcane using Fourier-transform infrared microspectroscopy and multivariate imaging

Localization of polyhydroxybutyrate in sugarcane using Fourier-transform infrared microspectroscopy and multivariate imaging

Date: July 10, 2015
Creator: Lupoi, Jason S.; Smith-Mortiz, Andreia; Singh, Seema; McQualter, Richard B.; Scheller, Henrik V.; Simmons, Blake A. et al.
Description: This article demonstrates the power of infrared microspectroscopy to rapidly image plan sections to provide a snapshot of the chemical composition of the cell.
Contributing Partner: UNT College of Arts and Sciences
Accumulation of Flavonols over Hydroxycinnamic Acids Favors Oxidative Damage Protetion under Abiotic Stress

Accumulation of Flavonols over Hydroxycinnamic Acids Favors Oxidative Damage Protetion under Abiotic Stress

Date: June 15, 2016
Creator: Martinez, Vicente; Mestre, Teresa C.; Rubio, Francisco; Girones-Vilaplana, Amadeo; Moreno, Diego; Mittler, Ron et al.
Description: This article reports on the characterization of the different antioxidant mechanisms of tomato plants subjected to heat stress, salinity stress, or a combination of both stresses.
Contributing Partner: UNT College of Arts and Sciences
Epigenetic Inheritance and Its Role in Evolutionary Biology: Re-Evaluation and New Perspectives

Epigenetic Inheritance and Its Role in Evolutionary Biology: Re-Evaluation and New Perspectives

Date: May 25, 2016
Creator: Burggren, Warren W.
Description: This essay poses an argument for epigenetics having a potentially profound role in our understanding of inheritance, natural selection and evolution, and deserving more attention.
Contributing Partner: UNT College of Arts and Sciences
A deep transcriptomic analysis of pod development in the vanilla orchid (Vanilla planifolia)

A deep transcriptomic analysis of pod development in the vanilla orchid (Vanilla planifolia)

Date: November 7, 2014
Creator: Rao, Xiaolan; Krom, Nick; Tang, Yuhong; Widiez, Thomas; Havkin-Frenkel, Daphna; Belanger, Faith C. et al.
Description: This research article describes very large gene sequence datasets from vanilla pods at different times of development, representing different tissue types, including the seeds, hairs, and placental and mesocarp tissues within the pod.
Contributing Partner: UNT College of Arts and Sciences
Transcriptome analysis of secondary cell wall development in Medicago truncatula

Transcriptome analysis of secondary cell wall development in Medicago truncatula

Date: January 5, 2016
Creator: Wang, Huan-Zhong; Yang, Jung Hyun; Chen, Fang; Torres-Jerez, Ivone; Tang, Yuhong; Wang, Mingyi et al.
Description: This article describes a transcriptome microarray assay and high through-put quantitative real time PCR analysis of Medicago truncatula.
Contributing Partner: UNT College of Arts and Sciences
ABA is required for the accumulation of APX1 and MBF1c during a combination of water deficit and heat stress

ABA is required for the accumulation of APX1 and MBF1c during a combination of water deficit and heat stress

Date: July 18, 2016
Creator: Zandalinas, Sara I; Balfagón, Damián; Arbona, Vicent; Gómez-Cadenas, Aurelio; Inupakutika, Madhuri A. & Mittler, Ron
Description: This article studies the response of mutants impaired in ABA signalling (abi1-1) and biosynthesis (aba1-1) to a combination of water deficit and heat stress.
Contributing Partner: UNT College of Arts and Sciences
Comparative cell-specific transcriptomics reveals differentiation of C₄ photosynthesis pathways in switchgrass and other C₄ lineages

Comparative cell-specific transcriptomics reveals differentiation of C₄ photosynthesis pathways in switchgrass and other C₄ lineages

Date: December 10, 2015
Creator: Rao, Xiaolan; Lu, Nan; Li, Guifen; Nakashima, Jin; Tang, Yuhong & Dixon, R. A.
Description: This article provides an mesophyll and bundle sheath cell type-specific transcriptome data set from the monocot NAD-malic enzyme subtype switchgrass (Panicum virgatum).
Contributing Partner: UNT College of Arts and Sciences
Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Date: February 27, 2016
Creator: Veerappan, Vijaykumar; Jani, Mehul; Kadel, Khem; Troiani, Taylor; Gale, Ronny; Mayes, Tyler et al.
Description: This article demonstrates that whole genome sequencing is an efficient approach for identification of causative genes underlying symbiotic nitrogen fixation defective phenotypes in Medicago truncatula Tnt1 insertion mutants obtained via forward genetic screens.
Contributing Partner: UNT College of Arts and Sciences
Applications of Fourier Transform Ion Cyclotron Resonance (FT-ICR) and Orbitrap Based High Resolution Mass Spectrometry in Metabolomics and Lipidomics

Applications of Fourier Transform Ion Cyclotron Resonance (FT-ICR) and Orbitrap Based High Resolution Mass Spectrometry in Metabolomics and Lipidomics

Date: May 25, 2016
Creator: Ghaste, Manoj; Mistrik, Robert & Shulaev, Vladimir
Description: This review explores the latest developments in Fourier transform mass spectrometry and Orbitrap based metabolomics technology, its advantages and drawbacks for using in metabolomics and lipidomics studies, and development of novel approaches for processing high resolution mass spectrometry data.
Contributing Partner: UNT College of Arts and Sciences
Computational inference of the structure and regulation of the lignin pathway in Panicum virgatum

Computational inference of the structure and regulation of the lignin pathway in Panicum virgatum

Date: September 17, 2015
Creator: Faraji, Mojdeh; Fonseca, Luis L.; Escamilla-Treviño, Luis; Dixon, R. A. & Voit, Eberhard O.
Description: This article uses a systems biological modeling approach to address the challenge of in vivo measurements to elucidate the structure and regulation of the lignin pathway through a computational characterization of alternate candidate topologies.
Contributing Partner: UNT College of Arts and Sciences
Phenotypic developmental plasticity induced by preincubation egg storage in chicken embryos (Gallus gallus domesticus)

Phenotypic developmental plasticity induced by preincubation egg storage in chicken embryos (Gallus gallus domesticus)

Date: January 23, 2016
Creator: Branum, Sylvia R.; Tazawa, Hiroshi & Burggren, Warren W.
Description: This article investigates how preincubation egg storage conditions (temperature, duration, hypoxia, and hypercapnia) affects viability, body mass, and physiological variables and functions in day 15 chicken embryos.
Contributing Partner: UNT College of Arts and Sciences
Activation of apoptosis in NAF-1-deficient human epithelial breast cancer cells

Activation of apoptosis in NAF-1-deficient human epithelial breast cancer cells

Date: November 11, 2015
Creator: Holt, Sarah H.; Darash-Yahana, Merav; Sohn, Yang Sung; Song, Luhua; Karmi, Ola; Tamir, Sagi et al.
Description: This article shows that small hairpin RNA-mediated suppresion of NAF-1 results in the activation of apoptosis in epithelial breast cancer cells and xenograft tumors.
Contributing Partner: UNT College of Arts and Sciences
Draft Genome Sequence of a Bacillus Bacterium from the Atacama Desert Wetlands Metagenome

Draft Genome Sequence of a Bacillus Bacterium from the Atacama Desert Wetlands Metagenome

Date: August 20, 2015
Creator: Vilo, Claudia A.; Galetovic, Alexandra; Araya, Jorge E.; Gómez-Silva, Benito & Dong, Qunfeng
Description: This article reports the draft genome sequence of a Bacillus bacterium isolated from the microflora of Nostoc colonies grown at the Andean wetlands in northern Chile.
Contributing Partner: UNT College of Arts and Sciences
HSI2/VAL1 PHD-like domain promotes H3K27 trimethylation to repress the expression of seed maturation genes and complex transgenes in Arabidopsis seedlings

HSI2/VAL1 PHD-like domain promotes H3K27 trimethylation to repress the expression of seed maturation genes and complex transgenes in Arabidopsis seedlings

Date: November 1, 2014
Creator: Veerappan, Vijaykumar; Chen, Naichong; Reichert, Angelika & Allen, Randy D.
Description: This article studies the novel mutant allele hsi2-4, isolated in a genetic screen to identify Arabidopsis mutants with consitutively elevated expression of a glutathione S-transferase F8:luciferase reporter gene in Arabidopsis.
Contributing Partner: UNT College of Arts and Sciences
An UPLC-ESI-MS/MS Assay Using 6-Aminoquinolyl-N-Hydroxysuccinimidyl Carbamate Derivatization for Targeted Aminio Acid Analysis: Application to Screening of Arabidopsis thaliana Mutants

An UPLC-ESI-MS/MS Assay Using 6-Aminoquinolyl-N-Hydroxysuccinimidyl Carbamate Derivatization for Targeted Aminio Acid Analysis: Application to Screening of Arabidopsis thaliana Mutants

Date: July 6, 2012
Creator: Salazar, Carolina; Armenta, Jenny M. & Shulaev, Vladimir
Description: This article presents a method that enables thirty-eight metabolites (proteinogenic amino acids and related compounds) to be analyzed, with an improved sensitivity of 1 to 5 orders of magnitude compared to existing methods.
Contributing Partner: UNT College of Arts and Sciences
Tissue biodistribution of intravenously administrated titanium dioxide nanoparticles revealed blood-brain barrier clearance and brain inflammation in rat

Tissue biodistribution of intravenously administrated titanium dioxide nanoparticles revealed blood-brain barrier clearance and brain inflammation in rat

Date: September 4, 2015
Creator: Disdier, Clémence; Devoy, Jérôme; Cosnefroy, Anne; Chalansonnet, Monique; Herlin-Boime, Nathalie; Brun, Emilie et al.
Description: This article reports time-related responses from single-dose intravenous administration of 1 mg/kg Ti₂ NPs to rats, with particular emphasis on titanium quantification in the brain.
Contributing Partner: UNT College of Arts and Sciences
Comparing interval estimates for small sample ordinal CFA models

Comparing interval estimates for small sample ordinal CFA models

Date: October 30, 2015
Creator: Natesan, Prathiba
Description: This article compares Bayesian, Robust maximum likelihood, and asymptotically generalized least squares interval estimates of factor correlations in ordinal confirmatory factor analysis models for small sample data.
Contributing Partner: UNT College of Arts and Sciences
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