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  Partner: UNT College of Arts and Sciences
 Department: Biological Sciences
 Decade: 2010-2019
 Language: English
 Collection: UNT Scholarly Works
Cardiac and metabolic physiology of early larval zebrafish (Danio rerio) reflects parental swimming stamina

Cardiac and metabolic physiology of early larval zebrafish (Danio rerio) reflects parental swimming stamina

Date: February 24, 2012
Creator: Gore, Matthew & Burggren, Warren W.
Description: This article discusses cardiac and metabolic physiology of early larval zebrafish (Danio rerio) reflecting parental swimming stamina. Abstract: Swimming stamina in adult fish is heritable, it is unknown if inherited traits that support enhanced swimming stamina in offspring appear only in juveniles and/or adults, or if these traits actually appear earlier in the morphologically quite different larvae. To answer this question, mature adult zebrafish (Danio rerio) were subjected to a swimming performance test that allowed separation into low swimming stamina or high swimming stamina groups. Adults were then bred within their own performance groups. Larval offspring from each of the two groups, designated high (L(HSD)) and low stamina-derived larvae (L(LSD)), were then reared at 27°C in aerated water (21% O(2)). Routine (f(H),r) and active (f(H),a) heart rate, and routine [Formula: see text] and active [Formula: see text] mass-specific oxygen consumption were recorded from 5 days post fertilization (dpf) through 21 dpf, and gross cost of transport and factorial aerobic metabolic scope were derived from [Formula: see text] measurements. Heart rate generally ranged between 150 and 225 bpm in both L(HSD) and L(LSD) populations. However, significant (P<0.05) differences existed between the L(LSD) and L(HSD) populations at 5 and 14 dpf in ...
Contributing Partner: UNT College of Arts and Sciences
Characteristic Male Urine Microbiomes Associate with Asymptomatic Sexually Transmitted Infection

Characteristic Male Urine Microbiomes Associate with Asymptomatic Sexually Transmitted Infection

Date: November 2010
Creator: Nelson, David E.; Van Der Pol, Barbara; Dong, Qunfeng; Revanna, Kashi V.; Fan, Baochang; Easwaran, Shraddha et al
Description: This article discusses characteristic male urine microbiomes. Abstract: Background: The microbiome of the male urogenital tract is poorly described but it has been suggested that bacterial colonization of the male urethra might impact risk of sexually transmitted infection (STI). Previous cultivation-dependent studies showed that a variety of non-pathogenic bacteria colonize the urethra but did not thoroughly characterize these microbiomes or establish links between the compositions of urethral microbiomes and STI. Methodology/Findings: Here, the authors used 165 rRNA PCR and sequencing to identify bacteria in urine specimens collected from men who lacked symptoms of urethral inflammation but who differed in status for STI. All of the urine samples contained multiple bacteria genera and many contained taxa that colonize the human vagina. Uncultivated bacteria associated with female genital tract pathology were abundant in specimens from men who had STI. Conclusions: Urine microbiomes from men with STI were dominated by fastidious, anaerobic and uncultivated bacteria. The same taxa were rare in STI negative individuals. The authors' findings suggest that the composition of male urine microbiomes is related to STI.
Contributing Partner: UNT College of Arts and Sciences
Comparative Assessment of Peer Review: Project Outcomes Report

Comparative Assessment of Peer Review: Project Outcomes Report

Date: January 2013
Creator: Frodeman, Robert; Holbrook, J. Britt; Moen, William E.; Burggren, Warren W. & Mitcham, Carl
Description: This report discusses the Comparative Assessment of Peer Review (CAPR) project outcomes. Public funding agencies are required to demonstrate accountability to their government funders (e.g., Congress) as well as to the public. Some agencies - including the US National Science Foundation (NSF) - have used broader societal impacts criteria as part of the review process of grant proposals in order to connect scientific research to societal needs. But these agencies have often encountered questions from scientists and engineers for how to integrate such demands for broader societal impacts into their research proposals. In an effort to help clarify the idea of broader impacts, in 2010 NSF and Congress proposed a list of national needs that NSF-funded research would be required to meet. But was this the best solution? This report discusses the authors' research.
Contributing Partner: UNT College of Arts and Sciences
Computational criteria for establishing reflex from plasticity to hardwiring

Computational criteria for establishing reflex from plasticity to hardwiring

Date: July 20, 2010
Creator: Tam, Nicoladie D.
Description: This article accompanies a poster presentation on computational criteria for establishing reflex from plasticity to hardwiring. The role of synaptic plasticity in associative learning has been explored extensively computationally. Yet, the computational mechanism for hardwiring of the neural circuit has only been addressed recently using a systems approach of whole-animal behavior based on an evolutionary process for survival. In this paper, the authors will explore the computational criteria needed to establish the hardwiring of reflex.
Contributing Partner: UNT College of Arts and Sciences
Contributing factors in judgement of fairness by monetary value

Contributing factors in judgement of fairness by monetary value

Date: July 18, 2011
Creator: Tam, Nicoladie D.
Description: This article accompanies a poster presentation on contributing factors in judgement of fairness by monetary value. Given that the authors have developed for emotional response (Emotional-Gain Model) and a model for fairness (Fairness-Equity Model) that quantified emotional bias and fairness bias, the authors will use these models to reveal the hidden factors contributing to the emotional bias and fairness bias. Using the Ultimatum Game (UG) with human subjects to split a sum of money, the authors compare the responses between sharing $10 vs. $10 million.
Contributing Partner: UNT College of Arts and Sciences
Control of Root Architecture and Nodulation by the LATD/NIP Transporter

Control of Root Architecture and Nodulation by the LATD/NIP Transporter

Date: November 2010
Creator: Harris, Jeanne M. & Dickstein, Rebecca
Description: This article discusses root architecture and nodulation. Abstract: The Medicago truncatula LATD/NIP gene is essential for the development of lateral and primary root and nitrogen-fixing nodule meristems as well as for rhizobial invasion of nodules. LATD/NIP encodes a member of the NRT1(PTR1) nitrate and di-and tri-peptide transporter family, suggesting that its function is to transport one of these or another compound(s). Because latd/nip mutants can have their lateral and primary root defects rescued by ABA, ABA is a potential substrate for transport. LATD/NIP expression in the root meristem was demonstrated to be regulated by auxin, cytokinin and abscisic acid, but not by nitrate. LATD/NIP's potential function and its role in coordinating root architecture and nodule formation are discussed.
Contributing Partner: UNT College of Arts and Sciences
A cytochrome P450 monooxygenase commonly used for negative selection in transgenic plants causes growth anomalies by disrupting brassinosteroid signaling

A cytochrome P450 monooxygenase commonly used for negative selection in transgenic plants causes growth anomalies by disrupting brassinosteroid signaling

Date: April 15, 2011
Creator: Dasgupta, Kasturi; Ganesan, Savita; Manivasagam, Sindhu & Ayre, Brian G.
Description: This article discusses a cytochrome P450 monooxygenase. Abstract: Background: Cytochrome P450 monooxygenases form a large superfamily of enzymes that catalyze diverse reactions. The P450su1 gene from the soil bacteria Streptomyces griseolus encodes CYP105A1 which acts on various substrates including sulfonylurea herbicides, vitamin D, coumarins, and based on the work presented here, brassinosteroids. P450su1 is used as a negative-selection marker in plants because CYP105A1 converts the relatively benign sulfonyl urea pro-herbicide R7402 into a highly phytotoxic product. Consistent with its use for negative selection, transgenic Arabidopsis plants were generated with P450su1 situated between recognition sequences for FLP recombinase from yeast to select for recombinase-mediated excision. However, unexpected and prominent developmental aberrations resembling those described for mutants defective in brassinosteroid signaling were observed in many of the lines. Results: The phenotypes of the most affected lines included severe stunting, leaf curling, darkened leaves characteristic of anthocyanin accumulation, delayed transition to flowering, low pollen and seed yields, and delayed senescence. Phenotype severity correlated with P450su1 transcript abundance, but not with transcript abundance of other experimental genes, strongly implicating CYP105A1 as responsible for the defects. Germination and seedling growth of transgenic and control lines in the presence and absence of 24-epibrassinolide indicated that CYP105A1 ...
Contributing Partner: UNT College of Arts and Sciences
Derivation of the evolution of empathic other-regarding social emotions as compared to non-social self-regarding emotions

Derivation of the evolution of empathic other-regarding social emotions as compared to non-social self-regarding emotions

Date: July 16, 2012
Creator: Tam, Nicoladie D.
Description: This article accompanies a poster presentation on the derivation of the evolution of empathic other-regarding social emotions as compared to non-social self-regarding emotions. The present study derives the evolution of social emotions by inclusion of other-regarding concerns from the non-social emotions of self-regarding concerns. Emotional processing is a self-discovered error-correction feedback process in which computations are involved to assess the accuracy of the internal brain-generated predictions with respect to the reality, in order to increase its probability of an organism's own survival.
Contributing Partner: UNT College of Arts and Sciences
The Ecoresponsive Genome of Daphnia pulex

The Ecoresponsive Genome of Daphnia pulex

Date: February 4, 2011
Creator: Colbourne, John K.; Pfrender, Michael E.; Gilbert, Donald; Thomas, W. Kelley; Tucker, Abraham; Oakley, Todd H. et al
Description: This article discusses the ecoresponsive genome of Daphnia pulex. Abstract: We describe the draft genome of the microcrustacean Daphnia pulex, which is only 200 megabases and contains at least 30,907 genes. The high gene count is a consequence of an elevated rate of gene duplication resulting in tandem gene clusters. More than a third of Daphnia's genes have no detectable homologs in any other available proteome, and the most amplified gene families are specific to the Daphnia lineage. The coexpansion of gene families interacting within metabolic pathways suggests that the maintenance of duplicated genes is not random, and the analysis of gene expression under different environmental conditions reveals that numerous paralogs acquire divergent expression patterns soon after duplication. Daphnia-specific genes, including many additional loci within sequenced regions that are otherwise devoid of annotations, are the most responsive genes to ecological challenges.
Contributing Partner: UNT College of Arts and Sciences
Functional Assessment of the Medicago truncatula NIP/LATD Protein Demonstrates That It Is a High-Affinity Nitrate Transporter

Functional Assessment of the Medicago truncatula NIP/LATD Protein Demonstrates That It Is a High-Affinity Nitrate Transporter

Date: October 2012
Creator: Bagchi, Rammyani; Salehin, Mohammad; Adeyemo, O. Sarah; Salazar, Carolina; Shulaev, Vladimir; Sherrier, D. Janine et al
Description: This article discusses a functional assessment of the Medicago truncatula NIP/LATD. Abstract: The Medicago truncatula NIP/LATD (for Numerous Infections and Polyphenolics/Lateral root-organ Defective) gene encodes a protein found in a clade of nitrate transporters within the large NRT1(PTR) family that also encodes transporters of dipeptides and tripeptides, dicarboxylates, auxin, and abscisic acid. Of the NRT1(PTR) members known to transport nitrate, most are low-affinity transporters. Here, the authors show that M. truncatula nip/latd mutants are more defective in their lateral root responses to nitrate provided at low (250 μм) concentrations than at higher (5mм) concentrations; however, nitrate uptake experiments showed no discernible differences in uptake in the mutants. Heterologous expression experiments showed that MtNIP/LATD encodes a nitrate transporter: expression in Xenopus laevis oocytes conferred upon the oocytes the ability to take up nitrate from the medium, but oocytes expressing the less severe Mtnip-3 allele were proficient in nitrate transport. M. truncatula nip/latd mutants have pleiotropic defects in nodulation and root architecture defects but not for nodulation defects. This suggests that the spectrum of activities inherent in AtNRT1.1 is different from that possessed by MtNIP/LATD, but it could also reflect stability differences of each protein in M. truncatula. Collectively, the data show ...
Contributing Partner: UNT College of Arts and Sciences
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