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  Partner: UNT Libraries
 Degree Discipline: Computer Science
 Degree Level: Doctoral
 Collection: UNT Theses and Dissertations
Detection of Ulcerative Colitis Severity and Enhancement of Informative Frame Filtering Using Texture Analysis in Colonoscopy Videos

Detection of Ulcerative Colitis Severity and Enhancement of Informative Frame Filtering Using Texture Analysis in Colonoscopy Videos

Date: December 2015
Creator: Dahal, Ashok
Description: There are several types of disorders that affect our colon’s ability to function properly such as colorectal cancer, ulcerative colitis, diverticulitis, irritable bowel syndrome and colonic polyps. Automatic detection of these diseases would inform the endoscopist of possible sub-optimal inspection during the colonoscopy procedure as well as save time during post-procedure evaluation. But existing systems only detects few of those disorders like colonic polyps. In this dissertation, we address the automatic detection of another important disorder called ulcerative colitis. We propose a novel texture feature extraction technique to detect the severity of ulcerative colitis in block, image, and video levels. We also enhance the current informative frame filtering methods by detecting water and bubble frames using our proposed technique. Our feature extraction algorithm based on accumulation of pixel value difference provides better accuracy at faster speed than the existing methods making it highly suitable for real-time systems. We also propose a hybrid approach in which our feature method is combined with existing feature method(s) to provide even better accuracy. We extend the block and image level detection method to video level severity score calculation and shot segmentation. Also, the proposed novel feature extraction method can detect water and bubble frames ...
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Computational Methods for Discovering and Analyzing Causal Relationships in Health Data

Computational Methods for Discovering and Analyzing Causal Relationships in Health Data

Date: August 2015
Creator: Liang, Yiheng
Description: Publicly available datasets in health science are often large and observational, in contrast to experimental datasets where a small number of data are collected in controlled experiments. Variables' causal relationships in the observational dataset are yet to be determined. However, there is a significant interest in health science to discover and analyze causal relationships from health data since identified causal relationships will greatly facilitate medical professionals to prevent diseases or to mitigate the negative effects of the disease. Recent advances in Computer Science, particularly in Bayesian networks, has initiated a renewed interest for causality research. Causal relationships can be possibly discovered through learning the network structures from data. However, the number of candidate graphs grows in a more than exponential rate with the increase of variables. Exact learning for obtaining the optimal structure is thus computationally infeasible in practice. As a result, heuristic approaches are imperative to alleviate the difficulty of computations. This research provides effective and efficient learning tools for local causal discoveries and novel methods of learning causal structures with a combination of background knowledge. Specifically in the direction of constraint based structural learning, polynomial-time algorithms for constructing causal structures are designed with first-order conditional independence. Algorithms of ...
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Computational Methods for Vulnerability Analysis and Resource Allocation in Public Health Emergencies

Computational Methods for Vulnerability Analysis and Resource Allocation in Public Health Emergencies

Date: August 2015
Creator: Indrakanti, Saratchandra
Description: POD (Point of Dispensing)-based emergency response plans involving mass prophylaxis may seem feasible when considering the choice of dispensing points within a region, overall population density, and estimated traffic demands. However, the plan may fail to serve particular vulnerable sub-populations, resulting in access disparities during emergency response. Federal authorities emphasize on the need to identify sub-populations that cannot avail regular services during an emergency due to their special needs to ensure effective response. Vulnerable individuals require the targeted allocation of appropriate resources to serve their special needs. Devising schemes to address the needs of vulnerable sub-populations is essential for the effectiveness of response plans. This research focuses on data-driven computational methods to quantify and address vulnerabilities in response plans that require the allocation of targeted resources. Data-driven methods to identify and quantify vulnerabilities in response plans are developed as part of this research. Addressing vulnerabilities requires the targeted allocation of appropriate resources to PODs. The problem of resource allocation to PODs during public health emergencies is introduced and the variants of the resource allocation problem such as the spatial allocation, spatio-temporal allocation and optimal resource subset variants are formulated. Generating optimal resource allocation and scheduling solutions can be computationally hard ...
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Investigation on Segmentation, Recognition and 3D Reconstruction of Objects Based on Lidar Data Or Mri

Investigation on Segmentation, Recognition and 3D Reconstruction of Objects Based on Lidar Data Or Mri

Date: May 2015
Creator: Tang, Shijun
Description: Segmentation, recognition and 3D reconstruction of objects have been cutting-edge research topics, which have many applications ranging from environmental and medical to geographical applications as well as intelligent transportation. In this dissertation, I focus on the study of segmentation, recognition and 3D reconstruction of objects using LiDAR data/MRI. Three main works are that (I). Feature extraction algorithm based on sparse LiDAR data. A novel method has been proposed for feature extraction from sparse LiDAR data. The algorithm and the related principles have been described. Also, I have tested and discussed the choices and roles of parameters. By using correlation of neighboring points directly, statistic distribution of normal vectors at each point has been effectively used to determine the category of the selected point. (II). Segmentation and 3D reconstruction of objects based on LiDAR/MRI. The proposed method includes that the 3D LiDAR data are layered, that different categories are segmented, and that 3D canopy surfaces of individual tree crowns and clusters of trees are reconstructed from LiDAR point data based on a region active contour model. The proposed method allows for delineations of 3D forest canopy naturally from the contours of raw LiDAR point clouds. The proposed model is suitable not ...
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SEM Predicting Success of Student Global Software Development Teams

SEM Predicting Success of Student Global Software Development Teams

Date: May 2015
Creator: Brooks, Ian Robert
Description: The extensive use of global teams to develop software has prompted researchers to investigate various factors that can enhance a team’s performance. While a significant body of research exists on global software teams, previous research has not fully explored the interrelationships and collective impact of various factors on team performance. This study explored a model that added the characteristics of a team’s culture, ability, communication frequencies, response rates, and linguistic categories to a central framework of team performance. Data was collected from two student software development projects that occurred between teams located in the United States, Panama, and Turkey. The data was obtained through online surveys and recorded postings of team activities that occurred throughout the global software development projects. Partial least squares path modeling (PLS-PM) was chosen as the analytic technique to test the model and identify the most influential factors. Individual factors associated with response rates and linguistic characteristics proved to significantly affect a team’s activity related to grade on the project, group cohesion, and the number of messages received and sent. Moreover, an examination of possible latent homogeneous segments in the model supported the existence of differences among groups based on leadership style. Teams with assigned leaders ...
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Video Analytics with Spatio-Temporal Characteristics of Activities

Video Analytics with Spatio-Temporal Characteristics of Activities

Date: May 2015
Creator: Cheng, Guangchun
Description: As video capturing devices become more ubiquitous from surveillance cameras to smart phones, the demand of automated video analysis is increasing as never before. One obstacle in this process is to efficiently locate where a human operator’s attention should be, and another is to determine the specific types of activities or actions without ambiguity. It is the special interest of this dissertation to locate spatial and temporal regions of interest in videos and to develop a better action representation for video-based activity analysis. This dissertation follows the scheme of “locating then recognizing” activities of interest in videos, i.e., locations of potentially interesting activities are estimated before performing in-depth analysis. Theoretical properties of regions of interest in videos are first exploited, based on which a unifying framework is proposed to locate both spatial and temporal regions of interest with the same settings of parameters. The approach estimates the distribution of motion based on 3D structure tensors, and locates regions of interest according to persistent occurrences of low probability. Two contributions are further made to better represent the actions. The first is to construct a unifying model of spatio-temporal relationships between reusable mid-level actions which bridge low-level pixels and high-level activities. Dense ...
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Autonomic Failure Identification and Diagnosis for Building Dependable Cloud Computing Systems

Autonomic Failure Identification and Diagnosis for Building Dependable Cloud Computing Systems

Date: May 2014
Creator: Guan, Qiang
Description: The increasingly popular cloud-computing paradigm provides on-demand access to computing and storage with the appearance of unlimited resources. Users are given access to a variety of data and software utilities to manage their work. Users rent virtual resources and pay for only what they use. In spite of the many benefits that cloud computing promises, the lack of dependability in shared virtualized infrastructures is a major obstacle for its wider adoption, especially for mission-critical applications. Virtualization and multi-tenancy increase system complexity and dynamicity. They introduce new sources of failure degrading the dependability of cloud computing systems. To assure cloud dependability, in my dissertation research, I develop autonomic failure identification and diagnosis techniques that are crucial for understanding emergent, cloud-wide phenomena and self-managing resource burdens for cloud availability and productivity enhancement. We study the runtime cloud performance data collected from a cloud test-bed and by using traces from production cloud systems. We define cloud signatures including those metrics that are most relevant to failure instances. We exploit profiled cloud performance data in both time and frequency domain to identify anomalous cloud behaviors and leverage cloud metric subspace analysis to automate the diagnosis of observed failures. We implement a prototype of the ...
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Performance Engineering of Software Web Services and Distributed Software Systems

Performance Engineering of Software Web Services and Distributed Software Systems

Date: May 2014
Creator: Lin, Chia-en
Description: The promise of service oriented computing, and the availability of Web services promote the delivery and creation of new services based on existing services, in order to meet new demands and new markets. As Web and internet based services move into Clouds, inter-dependency of services and their complexity will increase substantially. There are standards and frameworks for specifying and composing Web Services based on functional properties. However, mechanisms to individually address non-functional properties of services and their compositions have not been well established. Furthermore, the Cloud ontology depicts service layers from a high-level, such as Application and Software, to a low-level, such as Infrastructure and Platform. Each component that resides in one layer can be useful to another layer as a service. It hints at the amount of complexity resulting from not only horizontal but also vertical integrations in building and deploying a composite service. To meet the requirements and facilitate using Web services, we first propose a WSDL extension to permit specification of non-functional or Quality of Service (QoS) properties. On top of the foundation, the QoS-aware framework is established to adapt publicly available tools for Web services, augmented by ontology management tools, along with tools for performance modeling ...
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Boosting for Learning From Imbalanced, Multiclass Data Sets

Boosting for Learning From Imbalanced, Multiclass Data Sets

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Date: December 2013
Creator: Abouelenien, Mohamed
Description: In many real-world applications, it is common to have uneven number of examples among multiple classes. The data imbalance, however, usually complicates the learning process, especially for the minority classes, and results in deteriorated performance. Boosting methods were proposed to handle the imbalance problem. These methods need elongated training time and require diversity among the classifiers of the ensemble to achieve improved performance. Additionally, extending the boosting method to handle multi-class data sets is not straightforward. Examples of applications that suffer from imbalanced multi-class data can be found in face recognition, where tens of classes exist, and in capsule endoscopy, which suffers massive imbalance between the classes. This dissertation introduces RegBoost, a new boosting framework to address the imbalanced, multi-class problems. This method applies a weighted stratified sampling technique and incorporates a regularization term that accommodates multi-class data sets and automatically determines the error bound of each base classifier. The regularization parameter penalizes the classifier when it misclassifies instances that were correctly classified in the previous iteration. The parameter additionally reduces the bias towards majority classes. Experiments are conducted using 12 diverse data sets with moderate to high imbalance ratios. The results demonstrate superior performance of the proposed method compared ...
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Simulating the Spread of Infectious Diseases in Heterogeneous Populations with Diverse Interactions Characteristics

Simulating the Spread of Infectious Diseases in Heterogeneous Populations with Diverse Interactions Characteristics

Date: December 2013
Creator: Gomez-Lopez, Iris Nelly
Description: The spread of infectious diseases has been a public concern throughout human history. Historic recorded data has reported the severity of infectious disease epidemics in different ages. Ancient Greek physician Hippocrates was the first to analyze the correlation between diseases and their environment. Nowadays, health authorities are in charge of planning strategies that guarantee the welfare of citizens. The simulation of contagion scenarios contributes to the understanding of the epidemic behavior of diseases. Computational models facilitate the study of epidemics by integrating disease and population data to the simulation. The use of detailed demographic and geographic characteristics allows researchers to construct complex models that better resemble reality and the integration of these attributes permits us to understand the rules of interaction. The interaction of individuals with similar characteristics forms synthetic structures that depict clusters of interaction. The synthetic environments facilitate the study of the spread of infectious diseases in diverse scenarios. The characteristics of the population and the disease concurrently affect the local and global epidemic progression. Every cluster’ epidemic behavior constitutes the global epidemic for a clustered population. By understanding the correlation between structured populations and the spread of a disease, current dissertation research makes possible to identify risk ...
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